Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QNH19_RS08205 Genome accession   NZ_CP126104
Coordinates   1622259..1623158 (+) Length   299 a.a.
NCBI ID   WP_094031704.1    Uniprot ID   -
Organism   Bacillus velezensis strain MB7_B11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1617259..1628158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS08185 (QNH19_08185) - 1617949..1619652 (+) 1704 WP_283888369.1 glycosyl transferase -
  QNH19_RS08190 (QNH19_08190) - 1619649..1619930 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  QNH19_RS08195 (QNH19_08195) sucC 1620105..1621262 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  QNH19_RS08200 (QNH19_08200) sucD 1621291..1622193 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  QNH19_RS08205 (QNH19_08205) dprA 1622259..1623158 (+) 900 WP_094031704.1 DNA-processing protein DprA Machinery gene
  QNH19_RS08210 (QNH19_08210) topA 1623340..1625415 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  QNH19_RS08215 (QNH19_08215) trmFO 1625480..1626787 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH19_RS08220 (QNH19_08220) xerC 1626857..1627774 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.03 Da        Isoelectric Point: 8.1570

>NTDB_id=836092 QNH19_RS08205 WP_094031704.1 1622259..1623158(+) (dprA) [Bacillus velezensis strain MB7_B11]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=836092 QNH19_RS08205 WP_094031704.1 1622259..1623158(+) (dprA) [Bacillus velezensis strain MB7_B11]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATTGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368