Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNH19_RS00250 Genome accession   NZ_CP126104
Coordinates   45556..45846 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain MB7_B11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40556..50846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS00210 (QNH19_00210) darA 40573..40902 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  QNH19_RS00215 (QNH19_00215) - 40915..41355 (+) 441 WP_004264730.1 DUF327 family protein -
  QNH19_RS00220 (QNH19_00220) holB 41367..42356 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  QNH19_RS00225 (QNH19_00225) ricT 42359..43186 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  QNH19_RS00230 (QNH19_00230) yabA 43201..43560 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  QNH19_RS00235 (QNH19_00235) - 43621..44364 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QNH19_RS00240 (QNH19_00240) - 44351..44650 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  QNH19_RS00245 (QNH19_00245) rsmI 44625..45506 (+) 882 WP_043020647.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QNH19_RS00250 (QNH19_00250) abrB 45556..45846 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  QNH19_RS00255 (QNH19_00255) metG 46330..48321 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  QNH19_RS00260 (QNH19_00260) - 48397..49164 (+) 768 WP_025284081.1 TatD family hydrolase -
  QNH19_RS00265 (QNH19_00265) - 49299..50624 (+) 1326 WP_283887620.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=836062 QNH19_RS00250 WP_169510469.1 45556..45846(-) (abrB) [Bacillus velezensis strain MB7_B11]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=836062 QNH19_RS00250 WP_169510469.1 45556..45846(-) (abrB) [Bacillus velezensis strain MB7_B11]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATTATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979