Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH50_RS26145 Genome accession   NZ_CP126092
Coordinates   5333064..5333591 (-) Length   175 a.a.
NCBI ID   WP_034316149.1    Uniprot ID   A0A9W4KK92
Organism   Peribacillus simplex strain D9_B_73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5328064..5338591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS26125 (QNH50_26125) rplI 5329139..5329588 (-) 450 WP_230300211.1 50S ribosomal protein L9 -
  QNH50_RS26130 (QNH50_26130) - 5329585..5331555 (-) 1971 WP_230300210.1 DHH family phosphoesterase -
  QNH50_RS26135 (QNH50_26135) - 5331596..5332543 (-) 948 WP_230300209.1 YybS family protein -
  QNH50_RS26140 (QNH50_26140) rpsR 5332777..5333016 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  QNH50_RS26145 (QNH50_26145) ssbA 5333064..5333591 (-) 528 WP_034316149.1 single-stranded DNA-binding protein Machinery gene
  QNH50_RS26150 (QNH50_26150) rpsF 5333660..5333944 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  QNH50_RS26155 (QNH50_26155) ychF 5334140..5335240 (-) 1101 WP_034316156.1 redox-regulated ATPase YchF -
  QNH50_RS26160 (QNH50_26160) - 5335409..5335606 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  QNH50_RS26165 (QNH50_26165) - 5335627..5336463 (-) 837 WP_230300208.1 mechanosensitive ion channel family protein -
  QNH50_RS26170 (QNH50_26170) yyaC 5336854..5337489 (+) 636 WP_230300207.1 spore protease YyaC -
  QNH50_RS26175 (QNH50_26175) - 5337546..5338247 (-) 702 WP_076368504.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19418.10 Da        Isoelectric Point: 4.8282

>NTDB_id=835448 QNH50_RS26145 WP_034316149.1 5333064..5333591(-) (ssbA) [Peribacillus simplex strain D9_B_73]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=835448 QNH50_RS26145 WP_034316149.1 5333064..5333591(-) (ssbA) [Peribacillus simplex strain D9_B_73]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCA
AATGACGGTAAAACAATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377