Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VNTUMSATTG_RS18465 Genome accession   NZ_AP024087
Coordinates   4026360..4027883 (-) Length   507 a.a.
NCBI ID   WP_022552154.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4021360..4032883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS18445 (VNTUMSATTG_35720) - 4022571..4023557 (+) 987 WP_038195542.1 serine/threonine protein kinase -
  VNTUMSATTG_RS18450 (VNTUMSATTG_35730) - 4023581..4024183 (+) 603 WP_004406510.1 thiol:disulfide interchange protein DsbA/DsbL -
  VNTUMSATTG_RS18455 (VNTUMSATTG_35740) - 4024246..4025130 (-) 885 WP_200766388.1 acyltransferase -
  VNTUMSATTG_RS18460 (VNTUMSATTG_35750) - 4025342..4026316 (+) 975 WP_200766389.1 DUF2860 family protein -
  VNTUMSATTG_RS18465 (VNTUMSATTG_35760) comM 4026360..4027883 (-) 1524 WP_022552154.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VNTUMSATTG_RS18470 (VNTUMSATTG_35770) ilvG 4028339..4029985 (+) 1647 WP_200766390.1 acetolactate synthase 2 catalytic subunit -
  VNTUMSATTG_RS18475 (VNTUMSATTG_35780) ilvM 4029985..4030269 (+) 285 WP_004406520.1 acetolactate synthase 2 small subunit -
  VNTUMSATTG_RS18480 (VNTUMSATTG_35790) ilvE 4030285..4031232 (+) 948 WP_004406522.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54877.98 Da        Isoelectric Point: 7.2979

>NTDB_id=83407 VNTUMSATTG_RS18465 WP_022552154.1 4026360..4027883(-) (comM) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MALAIIHSRACVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIAITKLGQTEFIGELALSGELRSVKGVLPAALAANRENHCLVVPDANGDQAALVGADVHKSAANL
LDVCADLCGQKTLGLFQTPELHFAKESSRCLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPDMSE
DEAMESASVASLTQQEINQYNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQTILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTQVVKQRVNFAREKMQARSGKVNALLGTREIDKYCPLHKQDAEFLENALHQLGLSIRAYHRIIKVARTIADLSGSPQ
IERPHIAEALGYRAMDRLMKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=83407 VNTUMSATTG_RS18465 WP_022552154.1 4026360..4027883(-) (comM) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGGCGTTAGCGATCATTCATAGCCGGGCGTGTGTAGGAGTGGAAGCTCCAGAAGTGACGGTTGAGGTTCACATCAGCAA
CGGAATGCCAGGGTTTACGTTGGTAGGATTACCAGAAACTACTGTGAAGGAATCTCGAGATCGGGTTCGCAGTGCGATTA
TTAATTCAGGCTTTGAGTTTCCAGCCAAGCGAATTACGGTCAATCTGGCTCCCGCAGACTTACCAAAAGAAGGTGGGAGG
TTTGATTTACCCATAGCACTGGGTATTTTGGCGGCATCAGAGCAGATTGCCATTACCAAACTGGGTCAGACCGAGTTTAT
TGGTGAACTGGCCCTTTCGGGTGAACTTCGGTCTGTCAAAGGCGTGTTACCAGCGGCATTAGCAGCAAACCGGGAAAACC
ATTGCTTGGTTGTGCCCGATGCTAATGGTGATCAGGCAGCTCTTGTTGGAGCGGATGTTCACAAATCGGCAGCCAATTTA
CTCGATGTATGCGCTGACTTGTGTGGGCAGAAAACTCTGGGGTTATTTCAAACCCCAGAACTTCATTTTGCAAAGGAATC
ATCACGATGCCTGCAAGACATCATTGGTCAGCAGCAAGGTAAGCGAGCACTAGAAATTGCCGCTGCGGGTAATCACAATT
TGCTTTTTCTTGGACCACCCGGTACGGGGAAAACCATGCTGGCGTCGCGACTGTGCGATTTGCTGCCCGACATGAGCGAA
GATGAGGCAATGGAAAGTGCGTCGGTTGCTTCTCTCACCCAACAAGAGATAAATCAGTACAACTGGAAGAAGCGTCCATT
CCGTTCCCCACACCATTCCAGTTCTATGGCGGCACTGGTTGGCGGTGGATCGATTCCTCGTCCTGGCGAAATATCTTTAG
CTCATAATGGACTCCTATTTTTAGATGAAATGCCGGAGTTTGAACGAAAAGTTCTGGATTCACTCAGAGAACCACTGGAA
TCTGGTGAAATCATCATTTCTCGCGCTGCGGGGAAAACCCGTTTTCCTGCCCGATTCCAGTTGGTTGGGGCATTGAACCC
TAGCCCGACGGGGTACTATGAGGGGAATCAAGCTCGGGTGAACCCTCAGACGATCCTGCGGTATTTGGGGCGACTATCAG
GACCTTTACTTGATCGCTTTGATATGTCGTTAGAAATACCGGCACTGCCGAAAGGTACGTTATCAGAAGGTGGCGATCGC
GGAGAACCGACTCAGGTGGTGAAACAAAGGGTCAACTTTGCCCGAGAGAAAATGCAGGCTCGCAGTGGAAAAGTGAATGC
GCTACTGGGAACCCGTGAAATCGACAAATACTGTCCTTTGCATAAGCAAGATGCAGAGTTTCTGGAGAACGCATTGCACC
AACTCGGGCTATCCATACGCGCTTATCATCGAATCATCAAAGTTGCACGTACGATTGCAGATTTGTCAGGAAGCCCTCAA
ATCGAGCGACCGCATATTGCTGAAGCGTTGGGGTATCGAGCGATGGACAGGTTAATGAAGCAACTGACGGCTCAAGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Glaesserella parasuis strain SC1401

63.137

100

0.635
  comM Haemophilus influenzae Rd KW20

63.314

100

0.633
  comM Legionella pneumophila str. Paris

49.899

98.028

0.489
  comM Legionella pneumophila strain ERS1305867

49.899

98.028

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.436

Multiple sequence alignment