Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNK08_RS08165 Genome accession   NZ_CP125983
Coordinates   1541829..1542107 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain ZKY04     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536829..1547107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS08145 (QNK08_08160) panEB 1538017..1538928 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  QNK08_RS08150 (QNK08_08165) ampS 1538962..1540194 (-) 1233 WP_003232341.1 aminopeptidase -
  QNK08_RS08155 (QNK08_08170) ykpC 1540303..1540437 (-) 135 WP_003238865.1 protein YkpC -
  QNK08_RS08160 (QNK08_08175) mreBH 1540538..1541545 (-) 1008 WP_069964461.1 cell shape-determining protein MreBH -
  QNK08_RS08165 (QNK08_08180) abrB 1541829..1542107 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  QNK08_RS08170 (QNK08_08185) kinC 1542297..1543583 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  QNK08_RS08175 (QNK08_08190) ykqA 1543599..1544432 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  QNK08_RS08180 (QNK08_08195) ktrC 1544495..1545160 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  QNK08_RS08185 (QNK08_08200) ade 1545315..1547048 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=834056 QNK08_RS08165 WP_003244728.1 1541829..1542107(+) (abrB) [Bacillus subtilis strain ZKY04]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=834056 QNK08_RS08165 WP_003244728.1 1541829..1542107(+) (abrB) [Bacillus subtilis strain ZKY04]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576