Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNK07_RS11335 Genome accession   NZ_CP125981
Coordinates   2224117..2224737 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY06     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219117..2229737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS11295 (QNK07_11315) ptsA 2220248..2220754 (-) 507 WP_026009842.1 PTS glucose transporter subunit IIA -
  QNK07_RS11300 (QNK07_11320) ypqA 2220892..2221311 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  QNK07_RS11305 (QNK07_11325) sppG 2221332..2221709 (-) 378 WP_004398696.1 YppG family protein -
  QNK07_RS11310 (QNK07_11330) yppF 2221897..2222085 (+) 189 WP_003230690.1 YppF family protein -
  QNK07_RS11315 (QNK07_11335) yppE 2222124..2222495 (-) 372 WP_003246080.1 YppE family protein -
  QNK07_RS11320 (QNK07_11340) yppD 2222541..2222786 (-) 246 WP_032722030.1 YppD family protein -
  QNK07_RS11325 (QNK07_11345) sspM 2222985..2223089 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QNK07_RS11330 (QNK07_11350) yppC 2223114..2224076 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  QNK07_RS11335 (QNK07_11355) recU 2224117..2224737 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QNK07_RS11340 (QNK07_11360) ponA 2224759..2227503 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  QNK07_RS11345 (QNK07_11365) ypoC 2227579..2228073 (-) 495 WP_009967579.1 YpoC family protein -
  QNK07_RS11350 (QNK07_11370) nth 2228070..2228729 (-) 660 WP_009967580.1 endonuclease III -
  QNK07_RS11355 (QNK07_11375) dnaD 2228748..2229446 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=833906 QNK07_RS11335 WP_004399067.1 2224117..2224737(+) (recU) [Bacillus subtilis strain ZKY06]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=833906 QNK07_RS11335 WP_004399067.1 2224117..2224737(+) (recU) [Bacillus subtilis strain ZKY06]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1