Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   U1R71_RS05170 Genome accession   NZ_CP140123
Coordinates   985280..986452 (+) Length   390 a.a.
NCBI ID   WP_014479273.1    Uniprot ID   -
Organism   Bacillus subtilis strain SJTU2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 980280..991452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U1R71_RS05150 (U1R71_05150) - 982146..983135 (+) 990 WP_033881969.1 bifunctional lytic transglycosylase/C40 family peptidase -
  U1R71_RS05155 (U1R71_05155) - 983150..983656 (+) 507 WP_031600318.1 hypothetical protein -
  U1R71_RS05160 (U1R71_05160) - 983719..984102 (+) 384 WP_033881966.1 cystatin-like fold lipoprotein -
  U1R71_RS05165 (U1R71_05165) - 984200..984988 (+) 789 WP_014479271.1 DUF4145 domain-containing protein -
  U1R71_RS05170 (U1R71_05170) rapF 985280..986452 (+) 1173 WP_014479273.1 Rap family tetratricopeptide repeat protein Regulator
  U1R71_RS05175 (U1R71_05175) - 986716..987162 (-) 447 WP_014479275.1 hypothetical protein -
  U1R71_RS05180 (U1R71_05180) yhcN 987312..987887 (+) 576 WP_014479276.1 YhcN/YlaJ family sporulation lipoprotein -
  U1R71_RS05185 (U1R71_05185) yhcQ 988908..989533 (-) 626 Protein_952 spore coat protein -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 46089.52 Da        Isoelectric Point: 5.6997

>NTDB_id=833705 U1R71_RS05170 WP_014479273.1 985280..986452(+) (rapF) [Bacillus subtilis strain SJTU2]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDALEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLSEVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
SASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGDYFQKGHEFVNKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMMSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=833705 U1R71_RS05170 WP_014479273.1 985280..986452(+) (rapF) [Bacillus subtilis strain SJTU2]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGCTCTTGAGAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTACTTGAATTCCGCCACGAGTTATTGGTCAATTACATGAATTCAGAAAAGACAGAAGAATTG
AAAAGTTCATATCTGGCTATGAAAAAGTTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGTG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTACTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATAGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGACTACAAA
AGTGCATCAAGTCATCTAAAAAAGGCGTTAGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGACTATTTTCAAAAAGGACATGAGTTTGTAAATA
AAACAAATGATGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCCCAATTTTT
TCATCGGAAACAGGATTTTCAACGCTCAAGTGAATATTATATGATGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(9-69)

Tetratricopeptide repeat (TPR_12)

(198-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

38.095

96.923

0.369