Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I3F59_RS09050 Genome accession   NZ_CP140097
Coordinates   2050443..2052671 (-) Length   742 a.a.
NCBI ID   WP_240135526.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2045443..2057671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS09030 (I3F59_009030) - 2046536..2046733 (+) 198 WP_240135522.1 MarR family transcriptional regulator -
  I3F59_RS09035 (I3F59_009035) - 2046785..2047999 (-) 1215 WP_240135523.1 cation:proton antiporter -
  I3F59_RS09040 (I3F59_009040) - 2048204..2048434 (+) 231 WP_240135524.1 cation transporter -
  I3F59_RS09045 (I3F59_009045) - 2048920..2050209 (-) 1290 WP_240135525.1 citrate synthase -
  I3F59_RS09050 (I3F59_009050) recD/recD2/recDB 2050443..2052671 (-) 2229 WP_240135526.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I3F59_RS09055 (I3F59_009055) - 2053331..2055157 (+) 1827 WP_240135527.1 glycoside hydrolase family 3 protein -
  I3F59_RS09060 (I3F59_009060) - 2055507..2056166 (+) 660 WP_240135528.1 hypothetical protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 79988.44 Da        Isoelectric Point: 6.4532

>NTDB_id=833048 I3F59_RS09050 WP_240135526.1 2050443..2052671(-) (recD/recD2/recDB) [Streptomyces sp. MUM 178J]
MSNAAVLEGVLERITYANEENGYTVARVDTGRGSGELLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TVQGIRRYLGSGLIKGIGPRIAERIVDHFGIDTLDVIEQRPDRLIEVPGLGPKRTRLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDRGHCFLPEEQL
IADAVKLLQVDTGLVIECLSELAGEEEGVVREQVPAPDGGDTPLTAVYLVPFHRAELSLSGQLRRLLRAEEDRMPAFQDV
AWDKALDWLASRTGAQLALEQQSAVELALTSKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLAELTG
AEASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLA
DGGPVPSVRLTQIFRQAQQSGVVTNAHRINSGKQPVTTGLADFFLFVQDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQV
LAPMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGQNGVFNGTVGVVTSLSVDDQRLTVL
TDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTV
SAGRRFTALDSRLAVPVSVPAC

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=833048 I3F59_RS09050 WP_240135526.1 2050443..2052671(-) (recD/recD2/recDB) [Streptomyces sp. MUM 178J]
ATGTCCAACGCAGCAGTGCTCGAAGGAGTCCTCGAGCGCATCACCTATGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTAGACACCGGCCGCGGCTCCGGCGAGCTGCTCACCGTCGTCGGATCTCTGCTCGGCGCGCAGCCGGGCGAGTCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCCCAGTACGGAAAGCAGTTCACCGTGGAGAACTACACCACGGTCCTCCCGGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGGCTGATCAAAGGCATCGGCCCCAGGATCGCCGAGCGGATCGTGGA
CCACTTCGGCATCGACACGCTCGACGTCATCGAGCAGCGCCCGGACAGGCTCATCGAGGTGCCCGGCCTTGGACCCAAGC
GGACCAGGCTGATCGGCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTGCAGGGCGTGGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCCATCTCGGTCGTGAAGAACCAGCCGTACCGCCT
TGCCGCCGATGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAAGCGGTGGGCATTCCGCACGACAGCCCCG
AGCGGGTCAAGGCGGGACTGCAGTACGCCCTGTCGCAGTCGACCGACCGGGGCCACTGCTTCCTGCCCGAGGAGCAGCTC
ATCGCCGACGCGGTGAAACTGCTCCAGGTGGACACCGGACTGGTCATCGAGTGCCTCTCCGAACTCGCCGGCGAGGAGGA
AGGCGTGGTGCGGGAGCAGGTCCCGGCCCCGGACGGCGGGGACACCCCGCTGACGGCCGTGTATCTGGTCCCCTTCCACC
GCGCCGAACTGTCGCTCTCCGGCCAGCTGCGCCGGCTGCTGCGCGCCGAGGAGGACCGGATGCCGGCCTTCCAGGACGTC
GCCTGGGACAAGGCCCTGGACTGGCTCGCCTCCCGTACGGGCGCGCAGCTCGCGCTGGAGCAGCAGTCCGCGGTCGAACT
GGCGCTGACCAGCAAGGTCGCGGTGCTCACCGGCGGCCCGGGCTGCGGCAAGTCCTTCACGGTCCGCTCGATCGTGGAGC
TGGCCCGCGCCAAGAGGGCCAAGGTGGTGCTGGCCGCGCCCACCGGCCGGGCCGCCAAGCGGCTTGCGGAGCTCACCGGC
GCCGAGGCGTCCACCGTGCACCGGCTGCTGGAGCTCAAGCCGGGCGGCGACGCGGCCTACGACCGGGAGCGGCCGCTGGA
CGCCGATCTGGTGGTGGTCGACGAGGCGTCGATGCTCGATCTACTGCTGGCGAACAAGCTGGTCAAAGCGGTGGCGCCGG
GTGCGCATCTGCTGCTGGTCGGGGATGTGGACCAGCTGCCCAGCGTCGGCGCCGGGGAGGTGCTGCGCGATCTGCTCGCC
GACGGCGGGCCGGTGCCCAGCGTCCGGCTGACGCAGATCTTCCGCCAGGCGCAGCAGTCGGGCGTCGTCACCAACGCCCA
CCGCATCAACTCGGGTAAGCAGCCCGTCACCACAGGACTGGCCGACTTCTTCCTCTTCGTCCAGGACGACACGGAGGAGG
CGGGACGGCTGACGGTCGATGTGGCGGCCCGGCGCATCCCCGCCAAGTTCGGCCTGGACCCGCGGCGGGATGTGCAGGTG
CTCGCGCCCATGCACCGCGGCCCCGCCGGCGCCGGCACGCTCAACGGCCTGCTCCAGCAGGCGATCACCCCCGCCCGTCC
CGATCTGCCGGAGAAGCGCTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATCCGGAACAACTATGAGA
AGGGCCAGAACGGCGTCTTCAACGGCACGGTCGGGGTCGTCACTTCCCTCAGCGTCGACGACCAGCGGCTTACCGTGCTC
ACCGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGGCGCACGCCTACGCCGTGACGATCCACCG
CTCGCAGGGCAGCGAGTATCCGGCCGTGGTGATCCCGGTCACCACGGGAGCCTGGATGATGCTCCAGCGCAATCTCCTGT
ACACGGCCGTGACCCGTGCCAAGAAGCTTGTGGTGCTGGTCGGCTCACGAAAGGCGATAGGACAGGCGGTGCGCACGGTG
TCCGCGGGTAGACGGTTTACAGCGCTCGACAGCCGACTGGCCGTGCCCGTGTCCGTGCCGGCCTGCTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-639)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

Helix-hairpin-helix domain (HHH_5)

(94-136)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(337-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.072

100

0.363