Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OPT60_RS09510 Genome accession   NZ_CP125359
Coordinates   1934863..1936224 (-) Length   453 a.a.
NCBI ID   WP_065355332.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929863..1941224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS09485 (OPT60_09485) - 1930584..1931852 (-) 1269 WP_084916678.1 MFS transporter -
  OPT60_RS09490 (OPT60_09490) - 1931947..1932648 (-) 702 WP_084916677.1 hypothetical protein -
  OPT60_RS09495 (OPT60_09495) - 1932652..1933098 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  OPT60_RS09500 (OPT60_09500) - 1933327..1934043 (-) 717 WP_015058072.1 TIGR00266 family protein -
  OPT60_RS09505 (OPT60_09505) - 1934179..1934673 (-) 495 WP_003053380.1 carbonic anhydrase -
  OPT60_RS09510 (OPT60_09510) radA 1934863..1936224 (-) 1362 WP_065355332.1 DNA repair protein RadA Machinery gene
  OPT60_RS09515 (OPT60_09515) - 1936307..1936753 (-) 447 WP_003053378.1 dUTP diphosphatase -
  OPT60_RS09520 (OPT60_09520) - 1936861..1937628 (-) 768 WP_014612596.1 epoxyqueuosine reductase QueH -
  OPT60_RS09525 (OPT60_09525) - 1937748..1939532 (-) 1785 WP_084916675.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49323.60 Da        Isoelectric Point: 6.0944

>NTDB_id=831239 OPT60_RS09510 WP_065355332.1 1934863..1936224(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=831239 OPT60_RS09510 WP_065355332.1 1934863..1936224(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTTCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
CAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACGAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCTTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG
TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.283

99.779

0.861
  radA Streptococcus pneumoniae Rx1

86.062

99.779

0.859
  radA Streptococcus pneumoniae D39

86.062

99.779

0.859
  radA Streptococcus pneumoniae R6

86.062

99.779

0.859
  radA Streptococcus pneumoniae TIGR4

86.062

99.779

0.859
  radA Streptococcus mitis SK321

86.062

99.779

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623