Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SHK14_RS05840 Genome accession   NZ_CP139337
Coordinates   1189799..1190536 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YZ22MPE54     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1184799..1195536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHK14_RS05810 yfiL 1184957..1185322 (-) 366 WP_029393184.1 DUF2799 domain-containing protein -
  SHK14_RS05815 aroF 1185532..1186602 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SHK14_RS05820 tyrA 1186613..1187734 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SHK14_RS05825 pheA 1187777..1188937 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  SHK14_RS05830 pheL 1189036..1189083 (-) 48 WP_010723158.1 phe operon leader peptide -
  SHK14_RS05835 raiA 1189187..1189528 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SHK14_RS05840 comL 1189799..1190536 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SHK14_RS05845 rluD 1190671..1191651 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SHK14_RS05850 yfiH 1191648..1192379 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  SHK14_RS05855 clpC 1192509..1195082 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=830075 SHK14_RS05840 WP_000197686.1 1189799..1190536(-) (comL) [Escherichia coli strain YZ22MPE54]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=830075 SHK14_RS05840 WP_000197686.1 1189799..1190536(-) (comL) [Escherichia coli strain YZ22MPE54]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376