Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SKB18_RS00540 Genome accession   NZ_CP139163
Coordinates   105578..106648 (+) Length   356 a.a.
NCBI ID   WP_012775101.1    Uniprot ID   A0A0H3MV97
Organism   Streptococcus suis strain cnzyss2-311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100578..111648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS00520 - 101693..102361 (+) 669 WP_011922395.1 SatD family protein -
  SKB18_RS00525 - 102365..103105 (+) 741 WP_011922396.1 DUF3307 domain-containing protein -
  SKB18_RS00530 - 103170..103607 (+) 438 WP_011922397.1 AAA family ATPase -
  SKB18_RS00535 - 104318..105219 (+) 902 Protein_103 Abi family protein -
  SKB18_RS00540 xerS 105578..106648 (+) 1071 WP_012775101.1 tyrosine recombinase XerS Machinery gene
  SKB18_RS00545 - 106718..108226 (-) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  SKB18_RS00550 - 108302..109243 (-) 942 WP_012775102.1 sensor histidine kinase -
  SKB18_RS00555 braR 109240..109905 (-) 666 WP_012775103.1 response regulator transcription factor Regulator
  SKB18_RS00560 - 109944..110201 (-) 258 WP_011922404.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SKB18_RS00565 relB 110185..110436 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41485.66 Da        Isoelectric Point: 9.2257

>NTDB_id=829414 SKB18_RS00540 WP_012775101.1 105578..106648(+) (xerS) [Streptococcus suis strain cnzyss2-311]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMGIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=829414 SKB18_RS00540 WP_012775101.1 105578..106648(+) (xerS) [Streptococcus suis strain cnzyss2-311]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAATGGTTACAGG
ATTCGGATTTGGTGGCTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACAAAAAAAGATATGGAA
GCTTTCATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAGAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTACTTAGAAGCCTACATGGGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCCGAATACCGTGGTCTGCCTAACCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCCACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCATGCCAATACCCAGGTCACCGATCTCTACACCCATATCGTCAACGA
TGAACAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MV97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831