Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R8507_RS08780 Genome accession   NZ_AP026925
Coordinates   1713533..1714243 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708533..1719243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS08765 (PC0094_17410) - 1709074..1709322 (-) 249 WP_000364990.1 YneF family protein -
  R8507_RS08770 (PC0094_17420) treC 1709578..1711203 (-) 1626 WP_000171209.1 alpha,alpha-phosphotrehalase -
  R8507_RS08775 (PC0094_17430) treP 1711381..1713348 (-) 1968 WP_044812636.1 PTS system trehalose-specific EIIBC component -
  R8507_RS08780 (PC0094_17440) treR 1713533..1714243 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8507_RS08785 - 1714398..1715724 (+) 1327 Protein_1740 ISL3 family transposase -
  R8507_RS08790 (PC0094_17470) - 1715799..1716725 (-) 927 WP_044812815.1 ATP-binding cassette domain-containing protein -
  R8507_RS08795 (PC0094_17480) amiE 1716736..1717803 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  R8507_RS08800 (PC0094_17490) amiD 1717812..1718738 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=82708 R8507_RS08780 WP_000760673.1 1713533..1714243(+) (treR) [Streptococcus pneumoniae strain PZ900700097]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=82708 R8507_RS08780 WP_000760673.1 1713533..1714243(+) (treR) [Streptococcus pneumoniae strain PZ900700097]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment