Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P7I81_RS06470 Genome accession   NZ_CP124648
Coordinates   1339703..1340260 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 2020CK-00220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1334703..1345260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I81_RS06450 (P7I81_06450) pilR 1335979..1337316 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  P7I81_RS06455 (P7I81_06455) thiO 1337362..1338456 (-) 1095 WP_049270875.1 glycine oxidase ThiO -
  P7I81_RS06460 (P7I81_06460) - 1338591..1339100 (+) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  P7I81_RS06465 (P7I81_06465) - 1339206..1339712 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  P7I81_RS06470 (P7I81_06470) pilV 1339703..1340260 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  P7I81_RS06475 (P7I81_06475) pilW 1340257..1341081 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  P7I81_RS06480 (P7I81_06480) pilX 1341078..1341665 (+) 588 WP_034001493.1 type 4a pilus minor pilin PilX -
  P7I81_RS06485 (P7I81_06485) pilY1 1341677..1345168 (+) 3492 WP_023111845.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=827039 P7I81_RS06470 WP_003094697.1 1339703..1340260(+) (pilV) [Pseudomonas aeruginosa strain 2020CK-00220]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=827039 P7I81_RS06470 WP_003094697.1 1339703..1340260(+) (pilV) [Pseudomonas aeruginosa strain 2020CK-00220]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978