Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QJQ47_RS27075 Genome accession   NZ_CP124612
Coordinates   5707010..5707567 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY3649     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5702010..5712567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ47_RS27055 (QJQ47_27060) pilR 5703286..5704623 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  QJQ47_RS27060 (QJQ47_27065) thiO 5704669..5705763 (-) 1095 WP_033943424.1 glycine oxidase ThiO -
  QJQ47_RS27065 (QJQ47_27070) - 5705898..5706407 (+) 510 WP_034037343.1 Tfp pilus assembly protein FimT/FimU -
  QJQ47_RS27070 (QJQ47_27075) - 5706513..5707019 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  QJQ47_RS27075 (QJQ47_27080) pilV 5707010..5707567 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QJQ47_RS27080 (QJQ47_27085) pilW 5707564..5708388 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QJQ47_RS27085 (QJQ47_27090) pilX 5708385..5708972 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QJQ47_RS27090 (QJQ47_27095) pilY1 5708984..5712469 (+) 3486 WP_034040518.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=826746 QJQ47_RS27075 WP_003119423.1 5707010..5707567(+) (pilV) [Pseudomonas aeruginosa strain NY3649]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=826746 QJQ47_RS27075 WP_003119423.1 5707010..5707567(+) (pilV) [Pseudomonas aeruginosa strain NY3649]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGATTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995