Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QI003_RS02140 Genome accession   NZ_CP124601
Coordinates   425917..427065 (+) Length   382 a.a.
NCBI ID   WP_014662770.1    Uniprot ID   A0A292GMY1
Organism   Bacillus stercoris strain BS21     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 420917..432065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS02120 (QI003_02120) - 421279..421959 (-) 681 WP_014662766.1 ABC transporter ATP-binding protein -
  QI003_RS02125 (QI003_02125) - 421975..423450 (-) 1476 WP_282373967.1 ABC transporter permease -
  QI003_RS02130 (QI003_02130) yclJ 423663..424346 (+) 684 WP_041521471.1 two-component system response regulator YclJ -
  QI003_RS02135 (QI003_02135) yclK 424333..425754 (+) 1422 WP_103031555.1 two-component system sensor histidine kinase YclK -
  QI003_RS02140 (QI003_02140) rapC 425917..427065 (+) 1149 WP_014662770.1 response regulator aspartate phosphatase RapC Regulator
  QI003_RS02145 (QI003_02145) phrC 427049..427171 (+) 123 WP_014662771.1 phosphatase RapC inhibitor PhrC Regulator
  QI003_RS02150 (QI003_02150) - 427269..427379 (-) 111 WP_040084173.1 YjcZ family sporulation protein -
  QI003_RS02155 (QI003_02155) - 427522..428886 (-) 1365 WP_014662772.1 aspartate kinase -
  QI003_RS02160 (QI003_02160) ceuB 429271..430221 (+) 951 WP_014662773.1 petrobactin ABC transporter permease YclN Machinery gene
  QI003_RS02165 (QI003_02165) yclO 430214..431161 (+) 948 WP_282373968.1 petrobactin ABC transporter permease YclO -
  QI003_RS02170 (QI003_02170) yclP 431155..431913 (+) 759 WP_014662775.1 petrobactin ABC transporter ATP-binding protein YclP -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45622.66 Da        Isoelectric Point: 4.9649

>NTDB_id=826586 QI003_RS02140 WP_014662770.1 425917..427065(+) (rapC) [Bacillus stercoris strain BS21]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDILD
PAIEYFEKAVSTFESSRIINSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPSEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=826586 QI003_RS02140 WP_014662770.1 425917..427065(+) (rapC) [Bacillus stercoris strain BS21]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAAAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAACATTGACAGCAATCAGGCAGATCTTAAAGGGCTGCTCGACTATTACGTGAATTTTTT
CCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAACTTTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTACTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATCAAAAATGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTGTTCGGGGTTAACCTGATGGATGAGAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGATATTCTTGAC
CCTGCCATTGAGTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCATCAATTCTCTGCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAGTGAAGAAGGA
ATCGAACGATGTTTTCAATACCTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAGTGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A292GMY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

98.429

100

0.984
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568