Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SE698_RS15720 Genome accession   NZ_CP138428
Coordinates   3303538..3304275 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 6EVA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298538..3309275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE698_RS15705 clpC 3298992..3301565 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  SE698_RS15710 yfiH 3301695..3302426 (-) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  SE698_RS15715 rluD 3302423..3303403 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE698_RS15720 comL 3303538..3304275 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SE698_RS15725 raiA 3304546..3304887 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SE698_RS15730 pheL 3304991..3305038 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  SE698_RS15735 pheA 3305137..3306297 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  SE698_RS15740 tyrA 3306340..3307461 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SE698_RS15745 aroF 3307472..3308542 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SE698_RS15750 yfiL 3308751..3309116 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=826470 SE698_RS15720 WP_000197686.1 3303538..3304275(+) (comL) [Escherichia coli strain 6EVA]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=826470 SE698_RS15720 WP_000197686.1 3303538..3304275(+) (comL) [Escherichia coli strain 6EVA]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTTATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376