Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SE694_RS17725 Genome accession   NZ_CP138416
Coordinates   3644658..3645395 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 39EVA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639658..3650395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE694_RS17710 clpC 3640112..3642685 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  SE694_RS17715 yfiH 3642815..3643546 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  SE694_RS17720 rluD 3643543..3644523 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE694_RS17725 comL 3644658..3645395 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SE694_RS17730 raiA 3645666..3646007 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SE694_RS17735 pheL 3646111..3646158 (+) 48 WP_010723158.1 phe operon leader peptide -
  SE694_RS17740 pheA 3646257..3647417 (+) 1161 WP_063502000.1 bifunctional chorismate mutase/prephenate dehydratase -
  SE694_RS17745 tyrA 3647460..3648581 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SE694_RS17750 aroF 3648592..3649662 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SE694_RS17755 yfiL 3649872..3650237 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=826152 SE694_RS17725 WP_000197686.1 3644658..3645395(+) (comL) [Escherichia coli strain 39EVA]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=826152 SE694_RS17725 WP_000197686.1 3644658..3645395(+) (comL) [Escherichia coli strain 39EVA]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376