Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SE697_RS18480 Genome accession   NZ_CP138397
Coordinates   3814075..3814812 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 81EVA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3809075..3819812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE697_RS18465 clpC 3809529..3812102 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  SE697_RS18470 yfiH 3812232..3812963 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  SE697_RS18475 rluD 3812960..3813940 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SE697_RS18480 comL 3814075..3814812 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SE697_RS18485 raiA 3815083..3815424 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SE697_RS18490 pheL 3815528..3815575 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  SE697_RS18495 pheA 3815673..3816833 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  SE697_RS18500 tyrA 3816876..3817997 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SE697_RS18505 aroF 3818008..3819078 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SE697_RS18510 yfiL 3819288..3819653 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=825836 SE697_RS18480 WP_000197686.1 3814075..3814812(+) (comL) [Escherichia coli strain 81EVA]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=825836 SE697_RS18480 WP_000197686.1 3814075..3814812(+) (comL) [Escherichia coli strain 81EVA]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376