Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SE861_RS02150 Genome accession   NZ_CP138371
Coordinates   382626..383660 (+) Length   344 a.a.
NCBI ID   WP_000732715.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain R31-snf2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 377626..388660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE861_RS02110 (SE861_02110) tsaE 377701..378144 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SE861_RS02115 (SE861_02115) - 378137..378658 (+) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  SE861_RS02120 (SE861_02120) brpA 378667..379974 (+) 1308 WP_000708161.1 biofilm formation/cell division transcriptional regulator BrpA -
  SE861_RS02125 (SE861_02125) - 380038..380334 (-) 297 WP_000690175.1 hypothetical protein -
  SE861_RS02130 (SE861_02130) - 380331..380750 (-) 420 WP_000368099.1 HIT family protein -
  SE861_RS02135 (SE861_02135) - 381086..381589 (+) 504 WP_000773458.1 hypothetical protein -
  SE861_RS02140 (SE861_02140) - 381641..381827 (-) 187 Protein_349 hypothetical protein -
  SE861_RS02145 (SE861_02145) pptA 381899..382624 (+) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  SE861_RS02150 (SE861_02150) pptB 382626..383660 (+) 1035 WP_000732715.1 ABC transporter permease Regulator
  SE861_RS02155 (SE861_02155) ccrZ 383718..384518 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  SE861_RS02160 (SE861_02160) trmB 384508..385143 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SE861_RS02170 (SE861_02170) rimP 385632..386108 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  SE861_RS02175 (SE861_02175) nusA 386144..387295 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  SE861_RS02180 (SE861_02180) rnpM 387317..387613 (+) 297 WP_001140526.1 RNase P modulator RnpM -
  SE861_RS02185 (SE861_02185) - 387606..387908 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  SE861_RS10755 - 387928..388080 (+) 153 Protein_358 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40275.64 Da        Isoelectric Point: 10.4229

>NTDB_id=825618 SE861_RS02150 WP_000732715.1 382626..383660(+) (pptB) [Streptococcus agalactiae strain R31-snf2]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDVILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELEPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=825618 SE861_RS02150 WP_000732715.1 382626..383660(+) (pptB) [Streptococcus agalactiae strain R31-snf2]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAATTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGTTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGGAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(147-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.965

100

0.48
  pptB Streptococcus salivarius strain HSISS4

47.674

100

0.477