Detailed information NTG0825499

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: SE933_RS01500
• Genome accession: NZ_CP138370
• Coordinates: 266837..267298 (-)
• Length: 153 a.a.
• NCBI ID: WP_001874812.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SagR40
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 261837..272298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE933_RS01465 (SE933_01465)	-	262390..263055 (-)	666	WP_000008113.1	CPBP family intramembrane glutamic endopeptidase	-
SE933_RS01470 (SE933_01470)	-	263124..263579 (-)	456	WP_000905673.1	hypothetical protein	-
SE933_RS01475 (SE933_01475)	-	263620..263757 (-)	138	WP_001865900.1	hypothetical protein	-
SE933_RS01480 (SE933_01480)	-	263816..264022 (-)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
SE933_RS01485 (SE933_01485)	-	264174..265367 (-)	1194	WP_000047534.1	acetate kinase	-
SE933_RS01490 (SE933_01490)	comGH	265399..266373 (-)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
SE933_RS01495 (SE933_01495)	comGG	266488..266859 (-)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	Machinery gene
SE933_RS01500 (SE933_01500)	comGF	266837..267298 (-)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	Machinery gene
SE933_RS01505 (SE933_01505)	comGE	267252..267551 (-)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	Machinery gene
SE933_RS01510 (SE933_01510)	comGD	267523..267936 (-)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
SE933_RS01515 (SE933_01515)	comGC/cglC	267911..268240 (-)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
SE933_RS01520 (SE933_01520)	comGB	268237..269280 (-)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
SE933_RS01525 (SE933_01525)	comGA	269174..270145 (-)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
SE933_RS01530 (SE933_01530)	-	270318..270683 (-)	366	WP_000285373.1	DUF1033 family protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17875.89 Da
• Isoelectric Point: 9.8392

>NTDB_id=825499 SE933_RS01500 WP_001874812.1 266837..267298(-) (comGF) [Streptococcus agalactiae strain SagR40]
MKIIRKFCTYQKLRVKAFTLLECLVALVTITGALLVYQGLTKLLAQQIVVMSSSSQSEWVLLTQQLNAEFEGAHLEYLRQ
NKLYLRKQDKIVTFGKSNKDDFRKTGYDGRGYQPMVYGLDNCQMSQTKSMVKLVFYFKDGLKRTFYYDFKEET

Nucleotide

• Length: 462 bp

>NTDB_id=825499 SE933_RS01500 WP_001874812.1 266837..267298(-) (comGF) [Streptococcus agalactiae strain SagR40]
TTGAAGATAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAAAGCATTTACGCTTTTAGAATGTTTGGTAGCATT
GGTTACAATCACAGGAGCTTTACTAGTTTATCAAGGACTGACAAAATTGTTGGCTCAACAGATAGTAGTGATGTCTTCTT
CCAGTCAGTCTGAATGGGTGTTATTAACTCAGCAACTAAATGCAGAATTTGAAGGCGCTCATCTGGAATATTTAAGACAG
AACAAACTTTATTTACGTAAGCAAGATAAGATTGTAACCTTTGGCAAATCTAATAAAGATGATTTCCGTAAGACAGGTTA
TGATGGTCGAGGTTATCAACCAATGGTTTATGGGTTAGACAATTGTCAAATGAGTCAGACCAAAAGTATGGTAAAACTTG
TTTTTTATTTTAAGGACGGGTTAAAAAGGACATTTTACTATGATTTTAAAGAAGAAACTTAA

Domains

Predicted by InterProScan.

• Putative Competence protein ComGF (ComGF) (49-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Streptococcus mutans UA159	47.887	92.81	0.444
comGF	Streptococcus mutans UA140	47.887	92.81	0.444
comGF/cglF	Streptococcus pneumoniae Rx1	43.165	90.85	0.392
comGF/cglF	Streptococcus pneumoniae D39	43.165	90.85	0.392
comGF/cglF	Streptococcus pneumoniae R6	43.165	90.85	0.392
comGF/cglF	Streptococcus pneumoniae TIGR4	43.165	90.85	0.392
comGF/cglF	Streptococcus mitis SK321	44.03	87.582	0.386
comGF/cglF	Streptococcus mitis NCTC 12261	43.284	87.582	0.379
comGF	Lactococcus lactis subsp. cremoris KW2	40.714	91.503	0.373