Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   R6Y88_RS20285 Genome accession   NZ_CP137687
Coordinates   3952693..3954183 (+) Length   496 a.a.
NCBI ID   WP_015383993.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3947693..3959183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS20265 serA 3948442..3950019 (-) 1578 WP_015483391.1 phosphoglycerate dehydrogenase -
  R6Y88_RS20270 fmnP 3950516..3951088 (+) 573 WP_015383996.1 riboflavin transporter FmnP -
  R6Y88_RS20275 fdxA 3951128..3951376 (-) 249 WP_003225461.1 ferredoxin -
  R6Y88_RS20280 gmmB 3951642..3952700 (+) 1059 WP_015483390.1 helix-turn-helix domain-containing protein -
  R6Y88_RS20285 recS 3952693..3954183 (+) 1491 WP_015383993.1 ATP-dependent DNA helicase RecQ Machinery gene
  R6Y88_RS20290 ypbD 3954210..3954812 (+) 603 WP_015483389.1 CPBP family intramembrane glutamic endopeptidase -
  R6Y88_RS20295 claE 3954763..3955497 (+) 735 WP_015483388.1 LysM peptidoglycan-binding domain-containing protein -
  R6Y88_RS20300 ypbF 3955560..3956003 (+) 444 WP_015383991.1 YpbF family protein -
  R6Y88_RS20305 ypbG 3956089..3956868 (+) 780 WP_015383990.1 metallophosphoesterase -
  R6Y88_RS20310 mecB 3957027..3957611 (+) 585 WP_003230533.1 genetic competence negative regulator -
  R6Y88_RS20315 gudB 3957767..3959041 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56533.03 Da        Isoelectric Point: 6.5039

>NTDB_id=822872 R6Y88_RS20285 WP_015383993.1 3952693..3954183(+) (recS) [Bacillus subtilis strain YT-4]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNHPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=822872 R6Y88_RS20285 WP_015383993.1 3952693..3954183(+) (recS) [Bacillus subtilis strain YT-4]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTAAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGTAGAGCG
GGCCGCGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCACCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996