Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   R5031_RS08335 Genome accession   NZ_CP137512
Coordinates   1832512..1835256 (-) Length   914 a.a.
NCBI ID   WP_033998478.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827512..1840256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5031_RS08290 (R5031_08290) - 1827822..1828052 (+) 231 WP_058032687.1 Arc family DNA-binding protein -
  R5031_RS08295 (R5031_08295) - 1828055..1828390 (+) 336 WP_033977725.1 hypothetical protein -
  R5031_RS08300 (R5031_08300) - 1828387..1829214 (+) 828 WP_171820539.1 hypothetical protein -
  R5031_RS08305 (R5031_08305) - 1829211..1829738 (+) 528 WP_052151009.1 hypothetical protein -
  R5031_RS08310 (R5031_08310) - 1829851..1830042 (+) 192 WP_033977727.1 hypothetical protein -
  R5031_RS08315 (R5031_08315) - 1830039..1830728 (+) 690 WP_033977729.1 hypothetical protein -
  R5031_RS08320 (R5031_08320) - 1830733..1831089 (+) 357 WP_033977737.1 hypothetical protein -
  R5031_RS08325 (R5031_08325) - 1831073..1831315 (+) 243 WP_033977731.1 DUF4224 domain-containing protein -
  R5031_RS08330 (R5031_08330) - 1831315..1832364 (+) 1050 WP_042929192.1 tyrosine-type recombinase/integrase -
  R5031_RS08335 (R5031_08335) fimV 1832512..1835256 (-) 2745 WP_033998478.1 motility hub landmark protein FimV Machinery gene
  R5031_RS08340 (R5031_08340) - 1835425..1836435 (-) 1011 WP_033977034.1 aspartate-semialdehyde dehydrogenase -
  R5031_RS08345 (R5031_08345) asd 1836537..1837649 (-) 1113 WP_012075055.1 aspartate-semialdehyde dehydrogenase -
  R5031_RS08350 (R5031_08350) leuB 1837719..1838801 (-) 1083 WP_033977032.1 3-isopropylmalate dehydrogenase -
  R5031_RS08355 (R5031_08355) - 1838860..1839621 (-) 762 WP_003155356.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 914 a.a.        Molecular weight: 95905.93 Da        Isoelectric Point: 3.9327

>NTDB_id=821744 R5031_RS08335 WP_033998478.1 1832512..1835256(-) (fimV) [Pseudomonas aeruginosa strain HPA0271]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRASRAPRASQ
AQAPAPVRTTAPAGSETYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLER
SPREALSQVQAQNQSWRGSRNPAAASAGARQLDATQRSAAGSAPAKVDAPDNLRLVSGEGKASKGADKGGKGDSKAIADT
LAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLAAEGQGVAQPGAAQVDAGAAAQAPAAAAPS
PAPAGEAPAAPAQPPVAPPPAPAAETPPAPAAPAPVQTEEPAEASFLDELLANPLWLAVIGGSALLALLVLLMILSRRNA
QKEKDEAAALAAEAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAASAEKTTAQTSDALGEADIYIAYGRFNQAAELLQN
AIYDEPQRSDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLD
DLSLDHTGHAAGPDAAGQDLDDAFDLSLDDLDGDLGGDEVQADLKSDSGALDDLTLDSDLDLAASAPAEKPADDLDFGLD
FADLAETPVDAKGDGLGDFSLDLDAPEDKLSDDDFLLSLNDDAAAAAPADNGFGLDTEAADEPSLSLPDDFDLSLADEPA
EPAVPAKSEDSFAAQLDEVSAQLDELASNLDEPKNAAPSFSAEDAAIASTLDGESDDDFDFLSGADEAATKLDLARAYID
MGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2745 bp        

>NTDB_id=821744 R5031_RS08335 WP_033998478.1 1832512..1835256(-) (fimV) [Pseudomonas aeruginosa strain HPA0271]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCACGGGTTGGGACT
CGGCGAAATAACCCTGAAGTCGGCGTTGAACCAGCCGCTGGATGCCGAGATCGAGCTGCTCGAAGTCCGCGACCTGAGTT
CGGGCGAGGTGATACCGAGCCTGGCGTCGCCGGAGGAATTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTTACCGAC
CTGAAGTTCACCCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACCTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTCGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAATACACCGTCCTGCTGGATCCGCCGCTGT
ACTCGCCGCAGGCCGCGGCGAGCGCCCCGCAGGCACCGGTCAGCGCGCCGCGGGCGAGCAGAGCTCCACGTGCCTCGCAG
GCACAGGCGCCGGCCCCGGTGCGGACCACCGCGCCGGCCGGCAGCGAGACCTATCGCACCGTGTCCAACGACACGCTGTG
GGAGATCGCCCAGCGCAACCGTACCGACCGGGTTTCCGTGCCGCAGGCGATGCTCGCCTTCCAGGAACTGAATCCGGGCG
CCTTCGTCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATCCCCACCGAACAACAGATGCTGGAGCGC
TCCCCGCGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCAGCGGCCAGCGC
CGGCGCCCGGCAATTGGACGCGACCCAGCGTAGCGCCGCCGGTTCGGCGCCGGCCAAGGTCGACGCCCCGGACAACCTGC
GCCTGGTTTCCGGCGAAGGCAAGGCCAGCAAGGGGGCCGACAAGGGCGGCAAGGGTGACAGCAAGGCGATCGCCGACACC
CTGGCGGTGACCAAGGAAAGCCTGGACAGCACCCGTCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGACCTGCAGAG
CCAGCTGGACAAGCTGCAGAAGCTGATCCAGCTGAAAGACGCGCAGTTGGCCAAGCTGCAGGGGCAATTGGCTGCCGAAG
GCCAGGGCGTAGCCCAGCCGGGCGCGGCCCAGGTGGATGCCGGCGCCGCTGCGCAAGCTCCCGCCGCCGCAGCGCCGTCC
CCGGCTCCCGCCGGCGAGGCGCCAGCCGCTCCGGCGCAGCCTCCGGTAGCGCCGCCGCCCGCGCCAGCGGCCGAGACCCC
GCCGGCGCCAGCCGCACCGGCCCCGGTACAGACGGAAGAACCGGCGGAAGCGAGTTTCCTCGACGAGTTGCTGGCCAATC
CGCTGTGGCTGGCGGTGATCGGCGGTAGCGCGCTGCTGGCCTTGCTGGTCCTGCTGATGATTCTGTCCCGGCGCAATGCG
CAGAAGGAGAAGGACGAGGCTGCGGCCCTGGCGGCGGAAGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGA
CGGCTTCGACGACCTGACCCTCGATGAGCCTGAGCCGCAGGTCGCGGCCGTTGCGGCGTCGGCCGAGAAGACCACCGCGC
AGACTTCCGATGCGCTGGGCGAGGCCGATATCTACATCGCCTACGGACGCTTCAACCAGGCCGCCGAACTGCTGCAGAAC
GCCATTTATGACGAGCCGCAGCGCAGCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGG
CTTCGCCCGCCAGGAAAACGAACTGCGCGAGATCGGTGGCGCCCAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGG
CGATGGTGGCGGTGGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAACTGGACAGCTTCAGCCTCGAC
GACCTGTCGCTGGACCACACCGGTCATGCGGCCGGGCCGGACGCGGCCGGGCAGGACCTCGACGACGCCTTCGACCTGAG
CCTGGATGACCTCGATGGCGATCTCGGCGGTGACGAGGTGCAGGCCGACCTCAAGTCCGATAGCGGTGCGCTGGACGACC
TGACCCTGGACAGCGATCTCGACCTGGCCGCCTCGGCGCCGGCGGAGAAGCCGGCCGATGACCTCGATTTCGGCCTGGAC
TTCGCCGACCTGGCGGAGACCCCGGTCGACGCCAAGGGCGACGGCCTGGGTGATTTCTCCCTGGACCTCGATGCGCCGGA
AGACAAGCTGTCGGATGACGATTTCCTGCTCTCGCTGAATGACGACGCGGCCGCCGCGGCGCCCGCCGACAACGGGTTCG
GCCTCGACACCGAGGCTGCCGACGAGCCGTCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAACCGGCG
GAGCCGGCCGTCCCGGCGAAGAGCGAAGACAGTTTTGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAATTGGC
CAGCAATCTTGACGAGCCGAAGAATGCGGCGCCGAGCTTCTCGGCCGAGGATGCGGCGATCGCCTCGACCCTGGATGGGG
AATCCGACGACGACTTCGATTTCCTTTCCGGCGCCGATGAAGCGGCGACCAAGCTGGATCTGGCGCGTGCCTATATCGAC
ATGGGCGACAGCGAGGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGCAACGACAGCCAGCAGGCGGAAGCCCG
CGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

90.126

52.079

0.469