Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PFB08_RS15485 Genome accession   NZ_CP123365
Coordinates   3032394..3033374 (-) Length   326 a.a.
NCBI ID   WP_001055626.1    Uniprot ID   -
Organism   Shigella flexneri strain MMGSG_23     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3027394..3038374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFB08_RS15455 (PFB08_15455) - 3028057..3028554 (+) 498 WP_011069503.1 SprT family zinc-dependent metalloprotease -
  PFB08_RS15460 (PFB08_15460) endA 3028649..3029356 (+) 708 WP_000286517.1 deoxyribonuclease I -
  PFB08_RS15465 (PFB08_15465) rsmE 3029436..3030167 (+) 732 WP_001222509.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  PFB08_RS15470 (PFB08_15470) gshB 3030180..3031130 (+) 951 WP_000593267.1 glutathione synthase -
  PFB08_RS15475 (PFB08_15475) - 3031239..3031802 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  PFB08_RS15480 (PFB08_15480) ruvX 3031802..3032218 (+) 417 WP_000017111.1 Holliday junction resolvase RuvX -
  PFB08_RS15485 (PFB08_15485) pilT 3032394..3033374 (-) 981 WP_001055626.1 type IV pilus twitching motility protein PilT Machinery gene
  PFB08_RS15490 (PFB08_15490) yggS 3033392..3034096 (+) 705 WP_000997800.1 pyridoxal phosphate homeostasis protein -
  PFB08_RS15495 (PFB08_15495) yggT 3034114..3034680 (+) 567 WP_001094817.1 osmotic shock tolerance protein YggT -
  PFB08_RS15500 (PFB08_15500) yggU 3034677..3034967 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  PFB08_RS15505 (PFB08_15505) - 3034975..3035568 (+) 594 WP_001174735.1 XTP/dITP diphosphatase -
  PFB08_RS15510 (PFB08_15510) hemW 3035561..3036697 (+) 1137 WP_000239924.1 radical SAM family heme chaperone HemW -
  PFB08_RS15515 (PFB08_15515) - 3037011..3037974 (+) 964 Protein_3030 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35942.17 Da        Isoelectric Point: 5.9975

>NTDB_id=820737 PFB08_RS15485 WP_001055626.1 3032394..3033374(-) (pilT) [Shigella flexneri strain MMGSG_23]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQKVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=820737 PFB08_RS15485 WP_001055626.1 3032394..3033374(-) (pilT) [Shigella flexneri strain MMGSG_23]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGTGGCAGAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAAAATGGCCAGCTGGATTTTGCCGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCACCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCTACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTTAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGGTTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTACGTGACAGTGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCAACCTTACATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTTGCGGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGAAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.514

100

0.399
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365
  pilB Legionella pneumophila strain ERS1305867

30.89

100

0.362