Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   R4700_RS07530 Genome accession   NZ_CP137112
Coordinates   1457674..1460034 (-) Length   786 a.a.
NCBI ID   WP_277770812.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 02H2025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1452674..1465034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4700_RS07500 vraR 1453037..1453669 (+) 633 WP_000698434.1 response regulator transcription factor Regulator
  R4700_RS07505 - 1453745..1454428 (+) 684 Protein_1434 DNA alkylation repair protein -
  R4700_RS07510 - 1454578..1454817 (+) 240 WP_000754501.1 hypothetical protein -
  R4700_RS07515 cbpG 1454898..1455488 (+) 591 Protein_1436 choline-binding protein CbpG -
  R4700_RS07520 - 1455844..1456149 (+) 306 WP_001821501.1 tyrosine-type recombinase/integrase -
  R4700_RS07525 tig 1456343..1457626 (+) 1284 WP_000116462.1 trigger factor -
  R4700_RS07530 recD/recD2/recDB 1457674..1460034 (-) 2361 WP_277770812.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R4700_RS07535 lepB 1460162..1460776 (-) 615 WP_001048155.1 signal peptidase I -
  R4700_RS07540 rnhC 1460788..1461660 (-) 873 WP_050220135.1 ribonuclease HIII -
  R4700_RS07545 zapA 1461747..1462049 (+) 303 WP_050220136.1 cell division protein ZapA -
  R4700_RS07550 - 1462046..1462594 (+) 549 WP_000622953.1 CvpA family protein -
  R4700_RS07555 mutS/mutS2 1462698..1465034 (+) 2337 WP_050220137.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88334.05 Da        Isoelectric Point: 4.5205

>NTDB_id=819905 R4700_RS07530 WP_277770812.1 1457674..1460034(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain 02H2025]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGITGLSAKNREAFVSTLRLNYGTEMVLSKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLIRILEKGKQKSQDLETIQKH
ITTVEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDFRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPVDFTQKKADRSYFEITSGHIPATIEKILGAALRNGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENEKQQAVSETVTSSASEQSYILTEENWDSIPAMIGITDTDLKEIFGK

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=819905 R4700_RS07530 WP_277770812.1 1457674..1460034(-) (recD/recD2/recDB) [Streptococcus pneumoniae strain 02H2025]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG
AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA
AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCACAGGACTCTCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGGTTTTGTCCAAACTAGCCAACTAC
GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA
GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGTATCCGCAGTCACTTGATTCGTATCCTTGAAAAAGGAAAACAGAAGAGCCAAGATTTAGAAACTATTCAAAAACAT
ATCACTACTGTCGAGCAAGAACTGGGGATTGAGTATGATAACATTCAAAAACAAGCTATTTGTGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACTGGTAAGACAACTGTTATCAATGGAATCATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACTTCAGGAAGAAAAGCAATCTGCCCATTCTTCTTGCTGCTCCAACTGGTCGAGCTGCTCGTCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTACCTAGATGCTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA
TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCGAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGTTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTACTA
GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA
AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGGGAGACAAGGTCATTCATTTGGTTAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT
GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT
TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACTATGCTACCCAA
CACATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATCTACTGGAGAATGAAAAGCAACAAGCTGTCTC
TGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACAGCATTCCAGCCATGATTG
GGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.578

95.165

0.396