Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R4715_RS04300 Genome accession   NZ_CP137108
Coordinates   878230..878823 (-) Length   197 a.a.
NCBI ID   WP_000271492.1    Uniprot ID   C1CP48
Organism   Streptococcus pneumoniae strain OXT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873230..883823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4715_RS04275 - 873921..874865 (+) 945 WP_000815629.1 magnesium transporter CorA family protein -
  R4715_RS04280 - 874877..875560 (+) 684 WP_000078022.1 DUF1129 domain-containing protein -
  R4715_RS04285 - 875815..876846 (+) 1032 WP_000255096.1 S66 peptidase family protein -
  R4715_RS04290 - 876983..877660 (-) 678 WP_000987422.1 CPBP family intramembrane glutamic endopeptidase -
  R4715_RS04295 - 877657..878220 (-) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  R4715_RS04300 ruvA 878230..878823 (-) 594 WP_000271492.1 Holliday junction branch migration protein RuvA Machinery gene
  R4715_RS04305 ribD 879228..880328 (+) 1101 WP_001284108.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R4715_RS04310 ribE 880313..880948 (+) 636 WP_000493846.1 riboflavin synthase -
  R4715_RS04315 - 880968..882173 (+) 1206 WP_001814751.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R4715_RS04320 ribE 882174..882641 (+) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21664.13 Da        Isoelectric Point: 6.2561

>NTDB_id=819376 R4715_RS04300 WP_000271492.1 878230..878823(-) (ruvA) [Streptococcus pneumoniae strain OXT]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEDQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=819376 R4715_RS04300 WP_000271492.1 878230..878823(-) (ruvA) [Streptococcus pneumoniae strain OXT]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGATCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CP48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

98.985

100

0.99
  ruvA Streptococcus pneumoniae R6

98.477

100

0.985
  ruvA Streptococcus pneumoniae D39

98.477

100

0.985
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.32

100

0.411