Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4711_RS06960 Genome accession   NZ_CP137107
Coordinates   1365023..1365922 (+) Length   299 a.a.
NCBI ID   WP_000904863.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15H4024     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360023..1370922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS06930 - 1360443..1360736 (+) 294 WP_000977365.1 hypothetical protein -
  R4711_RS06935 - 1360892..1362106 (+) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  R4711_RS06940 rpmH 1362251..1362385 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  R4711_RS06945 - 1362594..1363313 (+) 720 Protein_1344 DUF1542 domain-containing protein -
  R4711_RS06950 - 1363618..1364391 (+) 774 WP_000575633.1 TatD family hydrolase -
  R4711_RS06955 rnmV 1364391..1364951 (+) 561 WP_000660012.1 ribonuclease M5 -
  R4711_RS06960 comR 1365023..1365922 (+) 900 WP_000904863.1 helix-turn-helix transcriptional regulator Regulator
  R4711_RS06965 - 1366191..1368221 (+) 2031 WP_050100261.1 bacteriocin-associated integral membrane family protein -
  R4711_RS06970 - 1368223..1368864 (+) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  R4711_RS06975 - 1368857..1369165 (+) 309 Protein_1350 hypothetical protein -
  R4711_RS06980 rsmA 1369296..1370168 (+) 873 WP_050263712.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35313.07 Da        Isoelectric Point: 4.8952

>NTDB_id=819299 R4711_RS06960 WP_000904863.1 1365023..1365922(+) (comR) [Streptococcus pneumoniae strain 15H4024]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=819299 R4711_RS06960 WP_000904863.1 1365023..1365922(+) (comR) [Streptococcus pneumoniae strain 15H4024]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis P1/7

38.144

97.324

0.371
  comR Streptococcus suis 05ZYH33

38.144

97.324

0.371