Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R4702_RS06850 Genome accession   NZ_CP137106
Coordinates   1338060..1338959 (+) Length   299 a.a.
NCBI ID   WP_000904870.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333060..1343959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS06820 - 1333225..1333518 (+) 294 WP_000977373.1 hypothetical protein -
  R4702_RS06825 - 1333674..1334888 (+) 1215 WP_000666465.1 pyridoxal phosphate-dependent aminotransferase -
  R4702_RS06830 rpmH 1335033..1335167 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  R4702_RS06835 - 1335373..1336350 (+) 978 Protein_1327 DUF1542 domain-containing protein -
  R4702_RS06840 - 1336655..1337428 (+) 774 WP_317809538.1 TatD family hydrolase -
  R4702_RS06845 rnmV 1337428..1337988 (+) 561 WP_000664448.1 ribonuclease M5 -
  R4702_RS06850 comR 1338060..1338959 (+) 900 WP_000904870.1 helix-turn-helix transcriptional regulator Regulator
  R4702_RS06855 - 1339279..1339575 (+) 297 WP_000815394.1 lactococcin 972 family bacteriocin -
  R4702_RS06860 - 1339652..1341682 (+) 2031 WP_044811665.1 bacteriocin-associated integral membrane family protein -
  R4702_RS06865 - 1341684..1342325 (+) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  R4702_RS06870 - 1342318..1342626 (+) 309 WP_044811667.1 hypothetical protein -
  R4702_RS06875 rsmA 1342757..1343629 (+) 873 WP_044811669.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35351.12 Da        Isoelectric Point: 4.8336

>NTDB_id=819178 R4702_RS06850 WP_000904870.1 1338060..1338959(+) (comR) [Streptococcus pneumoniae strain 16P4028]
MLIGQKIKEIRIEKGVSRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=819178 R4702_RS06850 WP_000904870.1 1338060..1338959(+) (comR) [Streptococcus pneumoniae strain 16P4028]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAGTTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis P1/7

37.457

97.324

0.365
  comR Streptococcus suis 05ZYH33

37.457

97.324

0.365
  comR Streptococcus pyogenes MGAS8232

36.242

99.666

0.361