Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R4709_RS04275 Genome accession   NZ_CP137102
Coordinates   842609..843202 (-) Length   197 a.a.
NCBI ID   WP_050095040.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837609..848202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS04250 - 838300..839244 (+) 945 WP_000815629.1 magnesium transporter CorA family protein -
  R4709_RS04255 - 839256..839939 (+) 684 WP_000078022.1 DUF1129 domain-containing protein -
  R4709_RS04260 - 840194..841225 (+) 1032 WP_277779606.1 S66 peptidase family protein -
  R4709_RS04265 - 841362..842039 (-) 678 WP_050204245.1 CPBP family intramembrane glutamic endopeptidase -
  R4709_RS04270 - 842036..842599 (-) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  R4709_RS04275 ruvA 842609..843202 (-) 594 WP_050095040.1 Holliday junction branch migration protein RuvA Machinery gene
  R4709_RS04280 ribD 843608..844708 (+) 1101 WP_001284096.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R4709_RS04285 ribE 844693..845328 (+) 636 WP_000493846.1 riboflavin synthase -
  R4709_RS04290 - 845348..846553 (+) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R4709_RS04295 ribE 846554..847021 (+) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21592.07 Da        Isoelectric Point: 6.7338

>NTDB_id=818664 R4709_RS04275 WP_050095040.1 842609..843202(-) (ruvA) [Streptococcus pneumoniae strain 16H3071-2]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEDQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=818664 R4709_RS04275 WP_050095040.1 842609..843202(-) (ruvA) [Streptococcus pneumoniae strain 16H3071-2]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGATCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Streptococcus pneumoniae TIGR4

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.835

100

0.406