Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R4714_RS06640 Genome accession   NZ_CP137099
Coordinates   1232604..1233197 (+) Length   197 a.a.
NCBI ID   WP_000271487.1    Uniprot ID   Q97SY4
Organism   Streptococcus pneumoniae strain 20824-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1227604..1238197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS06620 ribE 1228786..1229253 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  R4714_RS06625 - 1229254..1230459 (-) 1206 WP_001863773.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R4714_RS06630 ribE 1230479..1231114 (-) 636 WP_000493846.1 riboflavin synthase -
  R4714_RS06635 ribD 1231099..1232199 (-) 1101 WP_001284101.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R4714_RS06640 ruvA 1232604..1233197 (+) 594 WP_000271487.1 Holliday junction branch migration protein RuvA Machinery gene
  R4714_RS06645 - 1233207..1233770 (+) 564 WP_000166605.1 DNA-3-methyladenine glycosylase I -
  R4714_RS06650 - 1233767..1234444 (+) 678 WP_000987429.1 CPBP family intramembrane glutamic endopeptidase -
  R4714_RS06655 - 1234599..1235630 (-) 1032 WP_000255092.1 S66 peptidase family protein -
  R4714_RS06660 - 1235885..1236568 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  R4714_RS06665 - 1236580..1237524 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21606.10 Da        Isoelectric Point: 6.7338

>NTDB_id=818347 R4714_RS06640 WP_000271487.1 1232604..1233197(+) (ruvA) [Streptococcus pneumoniae strain 20824-4]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=818347 R4714_RS06640 WP_000271487.1 1232604..1233197(+) (ruvA) [Streptococcus pneumoniae strain 20824-4]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97SY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

100

100

1
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416