Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   RYQ61_RS05230 Genome accession   NZ_CP136799
Coordinates   998266..1000599 (+) Length   777 a.a.
NCBI ID   WP_102568111.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 993266..1005599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS05210 (RYQ61_05210) lepB 995762..996376 (-) 615 WP_020998280.1 signal peptidase I -
  RYQ61_RS05215 (RYQ61_05215) rnhC 996380..997270 (-) 891 WP_102568113.1 ribonuclease HIII -
  RYQ61_RS05220 (RYQ61_05220) - 997356..997661 (+) 306 WP_003074635.1 hypothetical protein -
  RYQ61_RS05225 (RYQ61_05225) - 997658..998206 (+) 549 WP_102568112.1 CvpA family protein -
  RYQ61_RS05230 (RYQ61_05230) mutS/mutS2 998266..1000599 (+) 2334 WP_102568111.1 endonuclease MutS2 Machinery gene
  RYQ61_RS05235 (RYQ61_05235) - 1000660..1002081 (+) 1422 WP_102568110.1 C69 family dipeptidase -
  RYQ61_RS05240 (RYQ61_05240) trxA 1002186..1002500 (+) 315 WP_003074629.1 thioredoxin -
  RYQ61_RS05245 (RYQ61_05245) - 1002769..1004208 (+) 1440 WP_003077488.1 APC family permease -
  RYQ61_RS05250 (RYQ61_05250) - 1004356..1005210 (+) 855 WP_082311846.1 mechanosensitive ion channel family protein -
  RYQ61_RS05255 (RYQ61_05255) - 1005274..1005402 (+) 129 Protein_993 DUF4352 domain-containing protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87681.39 Da        Isoelectric Point: 6.3128

>NTDB_id=815665 RYQ61_RS05230 WP_102568111.1 998266..1000599(+) (mutS/mutS2) [Streptococcus intermedius strain XH2169]
MNRKILETLEFGKIKALFEPYLLTEQGRLELGQLFPSNKQERLETAFLEMTDMQQIFVQRPHFSLAATQDITGLTKRLEL
EGDLNIEEFLALKRILTVTQELTDFYDKLENVDLQRLNRLFEKLLAFPNLQGLLQAINEGGFVESFASDNLARIRRKIQE
NEVQVRDILQDILKTKGDMLVDQVVASRNGRNVLPVKNTFRNRISGVVHDISASGNTVYIEPRAVVNLNEEITNAQADER
HEILRILQELSDRIRPHITEIANNAWIIGHLDLVRAKVCFIQERGAVVPMLSDSKDIRLLHVAHPLIENAVANDLYFASD
LTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADNGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQVD
ENALVLLDELGAGTDPQEGAALAMAILEDLRLRQVKTMATTHYPELKAYGIEMAGVQNASMEFDTTSLRPTYRFMQGVPG
RSNALEIARRLGLSELVVRHAQEQTNTDSDVNRIIERLEEQTLESRKRLDNIREVEQENLKFNRALKKLYNEFNREKETE
LNKARLEAQEIVDLALSESESILKNLHDKSSLKPHEIIEAKAQLKKLAPETVDLSKNKVLKQAKKNRVPKVGDDILVTSY
GQRGTLVKQLKDGRWEAQVGLIKMTLEEQEFNLLKAEKEQQPKRKQVNVVKRTTTSGPRARLDLRGKRYEEAMQELDAFI
DQALLNNMAQVDIIHGIGTGVIREGVTKYLRRNKHVKSFGYAPQNAGGSGATIVVFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=815665 RYQ61_RS05230 WP_102568111.1 998266..1000599(+) (mutS/mutS2) [Streptococcus intermedius strain XH2169]
ATGAATAGAAAAATTTTAGAAACATTAGAATTTGGGAAAATCAAGGCACTCTTTGAACCCTATCTGTTAACAGAACAAGG
CCGTTTAGAGCTAGGACAGCTTTTTCCATCTAATAAACAGGAACGGTTGGAGACGGCGTTTTTAGAAATGACGGACATGC
AGCAGATTTTTGTGCAACGTCCGCATTTCAGCTTGGCTGCGACTCAAGACATTACTGGACTGACCAAGCGTTTGGAGCTG
GAAGGCGACTTAAATATTGAAGAATTTCTTGCTCTGAAGCGTATTTTAACTGTCACGCAAGAATTAACTGATTTCTATGA
TAAGTTGGAAAATGTTGATTTGCAACGCTTGAACCGTCTTTTTGAAAAATTATTGGCTTTTCCTAACCTGCAAGGATTAC
TGCAAGCCATCAATGAGGGTGGATTTGTCGAAAGCTTTGCGAGTGACAATTTAGCTCGCATTCGTCGGAAAATTCAAGAA
AATGAAGTTCAAGTGAGAGATATTCTGCAAGATATTCTCAAAACGAAGGGCGATATGTTGGTAGACCAAGTAGTAGCCAG
TCGAAATGGTCGCAATGTTTTGCCAGTTAAAAATACATTTCGTAATCGGATTTCAGGCGTGGTACATGATATTTCTGCTA
GTGGAAATACAGTATATATCGAGCCGAGGGCAGTAGTCAACCTCAACGAAGAAATCACCAATGCACAGGCAGACGAGCGG
CATGAGATTCTACGTATCTTGCAAGAGTTGTCCGACCGAATACGTCCTCATATTACTGAAATTGCTAATAACGCTTGGAT
TATTGGGCATTTGGATCTAGTTCGGGCAAAAGTGTGTTTTATACAGGAGAGAGGCGCGGTGGTGCCGATGTTGTCTGATA
GTAAGGATATTCGCCTGCTCCATGTTGCTCATCCCTTGATAGAAAATGCAGTGGCTAATGATTTGTACTTTGCGTCGGAT
TTAACAGAAATCGTCATTACTGGTCCTAACACAGGTGGGAAGACAATTATGCTGAAGACCTTGGGCTTGGCTCAGCTCAT
GGCGCAGTCTGGTCTGCCTATTTTGGCGGATAATGGTAGTCGAGTGGGGATTTTTGACCAAATTTTTGCCGACATCGGAG
ATGAGCAGTCTATTGAGCAGAGCTTATCGACTTTCTCTAGCCACATGACTAATATTGTTGCCATTTTAGAGCAGGTAGAC
GAAAATGCTCTGGTACTTCTGGATGAGCTTGGAGCTGGAACCGACCCGCAGGAGGGTGCAGCTCTTGCGATGGCAATCCT
TGAAGACCTGCGACTGCGGCAGGTCAAGACAATGGCAACGACTCATTACCCAGAGCTTAAGGCTTATGGGATTGAAATGG
CTGGCGTACAAAATGCTAGCATGGAGTTTGATACGACAAGTCTAAGACCAACTTATCGCTTTATGCAGGGGGTGCCAGGG
CGTTCTAATGCCCTTGAAATTGCTCGCCGTTTGGGCTTATCGGAACTTGTCGTTCGACATGCCCAAGAGCAGACCAACAC
GGACAGCGATGTCAATCGGATCATTGAGCGACTGGAGGAGCAAACGCTGGAAAGCCGCAAGCGCTTAGACAATATCCGTG
AGGTTGAGCAGGAAAATCTCAAATTTAACCGAGCACTCAAAAAACTTTACAATGAGTTTAACCGAGAGAAAGAAACCGAA
CTCAATAAGGCACGGTTGGAAGCTCAGGAAATTGTTGATCTGGCTTTGTCAGAGAGTGAGAGCATTCTCAAAAATCTCCA
TGATAAGTCTAGTCTCAAACCACATGAGATTATCGAAGCTAAGGCCCAGCTTAAAAAGTTGGCGCCAGAAACCGTTGATT
TATCAAAGAACAAGGTGCTCAAGCAGGCCAAGAAAAATCGTGTGCCCAAGGTGGGAGATGATATTCTGGTGACCAGCTAT
GGTCAGCGAGGAACCTTGGTCAAGCAGCTCAAGGACGGCCGTTGGGAGGCTCAGGTCGGTCTTATCAAGATGACTCTAGA
AGAGCAGGAATTTAATCTTCTAAAGGCTGAAAAGGAGCAGCAGCCTAAGCGCAAGCAGGTCAATGTGGTGAAACGAACAA
CCACAAGCGGACCAAGAGCTAGACTGGATTTGCGAGGCAAACGTTATGAAGAAGCTATGCAAGAGCTGGACGCCTTTATT
GATCAGGCTCTCCTCAACAACATGGCTCAGGTTGATATTATTCACGGTATCGGGACCGGTGTGATCCGTGAAGGTGTGAC
TAAGTACCTCCGCCGCAACAAGCACGTCAAGTCCTTTGGTTATGCTCCGCAAAATGCCGGTGGCAGCGGCGCGACGATTG
TGGTGTTTAAGTGA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-505)

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.29

100

0.399