Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   M2042_RS21905 Genome accession   NZ_AP023188
Coordinates   1118597..1119694 (+) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio alginolyticus strain HLBS-07     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113597..1124694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2042_RS21880 (HLBS07_42210) - 1114912..1116255 (-) 1344 WP_025767935.1 MATE family efflux transporter -
  M2042_RS21885 (HLBS07_42220) - 1116377..1116691 (-) 315 WP_005373603.1 DUF496 family protein -
  M2042_RS21890 (HLBS07_42230) - 1116912..1117136 (+) 225 WP_005385630.1 hypothetical protein -
  M2042_RS21895 (HLBS07_42240) - 1117302..1117952 (+) 651 WP_005373594.1 YceH family protein -
  M2042_RS21900 - 1117949..1118266 (+) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  M2042_RS21905 (HLBS07_42260) luxP 1118597..1119694 (+) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  M2042_RS21910 (HLBS07_42270) luxQ 1119694..1122270 (+) 2577 WP_017635176.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  M2042_RS21915 (HLBS07_42280) slyA 1122584..1123039 (+) 456 WP_005373589.1 transcriptional regulator SlyA -
  M2042_RS21920 (HLBS07_42290) - 1123075..1124133 (+) 1059 WP_017635178.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=81562 M2042_RS21905 WP_005385634.1 1118597..1119694(+) (luxP) [Vibrio alginolyticus strain HLBS-07]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=81562 M2042_RS21905 WP_005385634.1 1118597..1119694(+) (luxP) [Vibrio alginolyticus strain HLBS-07]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGTTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACTGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment