Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QBS11_RS17310 Genome accession   NZ_CP121851
Coordinates   3716531..3717640 (-) Length   369 a.a.
NCBI ID   WP_058057996.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3711531..3722640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS17280 - 3711984..3712991 (-) 1008 WP_279492137.1 Fe(3+) ABC transporter substrate-binding protein -
  QBS11_RS17285 glnK 3713250..3713588 (-) 339 WP_005341406.1 P-II family nitrogen regulator -
  QBS11_RS17290 arfB 3713790..3714206 (+) 417 WP_021230947.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  QBS11_RS17295 - 3714239..3714730 (+) 492 WP_058057970.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBS11_RS17300 - 3715090..3715515 (-) 426 WP_005340360.1 hypothetical protein -
  QBS11_RS17305 yaaA 3715710..3716483 (-) 774 WP_058057969.1 peroxide stress protein YaaA -
  QBS11_RS17310 pilU 3716531..3717640 (-) 1110 WP_058057996.1 type IVa pilus ATPase TapU Machinery gene
  QBS11_RS17315 pilT 3717669..3718703 (-) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  QBS11_RS17320 - 3718743..3719444 (+) 702 WP_058058360.1 YggS family pyridoxal phosphate-dependent enzyme -
  QBS11_RS17325 proC 3719587..3720411 (+) 825 WP_058058361.1 pyrroline-5-carboxylate reductase -
  QBS11_RS17330 - 3720423..3720974 (+) 552 WP_005340343.1 YggT family protein -
  QBS11_RS17335 yggU 3720974..3721276 (+) 303 WP_021230942.1 DUF167 family protein YggU -
  QBS11_RS17340 - 3721320..3721739 (+) 420 WP_058057966.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41053.08 Da        Isoelectric Point: 6.4327

>NTDB_id=814778 QBS11_RS17310 WP_058057996.1 3716531..3717640(-) (pilU) [Aeromonas veronii strain ANYA 14022]
MNLDDLLSELVERKGSDLFVTVGSPPTLKVNGHLVSLGGEALDKKGALTLVRDTLSSDHFERYIRTKEANYAIYREALGR
FRVSAFWQQELPGMVVRRIETRIPTFEDLQLPKILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGYRNQHADGHILTVED
PVEFVHQHGRSLVTQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRI
LHLVPQDKHRQFLFDLSFNLKAIVAQQLVPSMDGKRRCAAFEILLNTPLITDIIRKGEMHRLKEVMTKSTELGMQTFDQA
LFSLFCAGQIGYSEALANADSANDLRLLIKLSGRERLGTGTLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=814778 QBS11_RS17310 WP_058057996.1 3716531..3717640(-) (pilU) [Aeromonas veronii strain ANYA 14022]
ATGAATCTGGATGATCTGCTGAGCGAGCTGGTCGAGCGAAAGGGATCGGATCTGTTTGTGACGGTGGGCTCGCCGCCCAC
CCTCAAGGTGAATGGCCATCTTGTGTCGCTGGGGGGGGAGGCGCTCGACAAGAAGGGGGCACTGACGCTGGTCAGGGATA
CCCTCAGCAGCGATCACTTCGAGCGCTATATCCGCACCAAGGAGGCCAACTACGCGATCTATCGCGAAGCGCTTGGCCGT
TTTCGGGTCAGTGCCTTCTGGCAGCAGGAGCTGCCCGGCATGGTGGTGCGGCGTATCGAGACCCGCATTCCCACCTTTGA
AGATCTGCAGCTACCCAAGATCCTGCAAGAGGTGGCGATGGCCAAGCGGGGGCTGGTGCTGTTTGTCGGCGCCACCGGGG
CGGGCAAATCGACTACTCAGGCGGCGATGATCGGCTATCGCAACCAGCATGCCGATGGTCACATTCTGACGGTGGAAGAT
CCGGTGGAGTTCGTCCATCAGCATGGTCGCAGTCTGGTGACCCAGCGAGAGGTGGGGATCGACACCGAGTCATTCGATGT
GGCGCTAAAAAGCTCGCTGCGTCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGAAGTCAGGAGACCATGGAGTTTG
CCCTGCAGTTTGCCGAGACGGGCCATCTTTGTCTCGCTACTTTGCATGCCAACAATGCCAACCAGGCGCTGGATCGCATT
CTCCATCTGGTGCCGCAAGACAAACACCGCCAGTTCCTGTTCGATCTCTCTTTCAACCTCAAGGCCATCGTCGCCCAGCA
GTTGGTGCCGAGTATGGATGGCAAGCGGCGCTGCGCCGCGTTCGAGATCCTGCTCAATACCCCGCTCATCACCGACATCA
TCCGCAAGGGAGAGATGCATCGCCTCAAGGAGGTGATGACCAAATCCACCGAGCTGGGTATGCAGACATTCGATCAGGCG
CTCTTCAGCCTGTTCTGCGCCGGCCAGATTGGCTACAGTGAGGCACTCGCCAACGCTGACTCGGCCAACGACCTGCGACT
GCTGATCAAGCTCTCCGGTCGCGAGCGGCTCGGTACCGGCACGCTGGACAATGTGACGCTGGATGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

60.326

99.729

0.602
  pilU Pseudomonas stutzeri DSM 10701

60.114

95.122

0.572
  pilU Acinetobacter baylyi ADP1

56.941

95.664

0.545
  pilT Legionella pneumophila strain Lp02

41.667

87.805

0.366
  pilT Legionella pneumophila strain ERS1305867

41.667

87.805

0.366
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.823

91.87

0.366
  pilT Acinetobacter baylyi ADP1

39.296

92.412

0.363
  pilT Vibrio cholerae strain A1552

39.82

90.515

0.36
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

39.82

90.515

0.36