Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   RWU60_RS03075 Genome accession   NZ_CP136172
Coordinates   633534..634049 (-) Length   171 a.a.
NCBI ID   WP_196085892.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628534..639049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS03050 (RWU60_03050) - 629081..630724 (+) 1644 WP_000281766.1 nitrite/sulfite reductase -
  RWU60_RS03055 (RWU60_03055) - 630717..631202 (+) 486 WP_000935252.1 DUF934 domain-containing protein -
  RWU60_RS03060 (RWU60_03060) - 631284..631637 (+) 354 WP_000457779.1 DMT family transporter -
  RWU60_RS03065 (RWU60_03065) - 631680..632123 (-) 444 WP_001176580.1 VOC family protein -
  RWU60_RS03070 (RWU60_03070) - 632250..633425 (-) 1176 WP_216148067.1 thiolase family protein -
  RWU60_RS03075 (RWU60_03075) fimT 633534..634049 (-) 516 WP_196085892.1 GspH/FimT family pseudopilin Machinery gene
  RWU60_RS03080 (RWU60_03080) omp38 634431..635462 (+) 1032 WP_005109473.1 outer membrane protein Omp38 -
  RWU60_RS03085 (RWU60_03085) - 635587..635745 (-) 159 WP_000692859.1 hypothetical protein -
  RWU60_RS03090 (RWU60_03090) - 635749..636954 (-) 1206 WP_000512701.1 RtcB family protein -
  RWU60_RS03095 (RWU60_03095) - 637231..638691 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19576.83 Da        Isoelectric Point: 8.8196

>NTDB_id=813374 RWU60_RS03075 WP_196085892.1 633534..634049(-) (fimT) [Acinetobacter baumannii strain ABO21-A051]
MFKSPGFTIVELAITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=813374 RWU60_RS03075 WP_196085892.1 633534..634049(-) (fimT) [Acinetobacter baumannii strain ABO21-A051]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCGCTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427