Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | QA624_RS05080 | Genome accession | NZ_CP121526 |
| Coordinates | 715284..716156 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain 1FSE05 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 683132..725337 | 715284..716156 | within | 0 |
Gene organization within MGE regions
Location: 683132..725337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QA624_RS04940 | rsgA | 683771..684646 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| QA624_RS04945 | rpe | 684647..685291 (+) | 645 | WP_002469381.1 | ribulose-phosphate 3-epimerase | - |
| QA624_RS04950 | - | 685296..685931 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| QA624_RS04955 | rpmB | 686014..686202 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| QA624_RS04960 | - | 686560..686934 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| QA624_RS04965 | fakA | 686949..688607 (+) | 1659 | WP_002456580.1 | fatty acid kinase catalytic subunit FakA | - |
| QA624_RS04970 | recG | 688811..690859 (+) | 2049 | WP_002456579.1 | ATP-dependent DNA helicase RecG | - |
| QA624_RS04975 | fapR | 691018..691578 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| QA624_RS04980 | plsX | 691580..692557 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| QA624_RS04985 | fabD | 692559..693485 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| QA624_RS04990 | fabG | 693478..694212 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| QA624_RS04995 | - | 694440..694673 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| QA624_RS05000 | rnc | 694788..695525 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| QA624_RS05005 | smc | 695652..699221 (+) | 3570 | WP_002456574.1 | chromosome segregation protein SMC | - |
| QA624_RS05010 | ftsY | 699218..700444 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| QA624_RS05015 | - | 700446..700778 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| QA624_RS05020 | ffh | 700809..702176 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| QA624_RS05025 | rpsP | 702484..702759 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| QA624_RS05030 | rimM | 702886..703389 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| QA624_RS05035 | trmD | 703389..704126 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| QA624_RS05040 | rplS | 704232..704582 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| QA624_RS05045 | - | 705112..707715 (-) | 2604 | WP_002456572.1 | YfhO family protein | - |
| QA624_RS05050 | - | 707708..710308 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| QA624_RS05055 | ylqF | 710637..711500 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| QA624_RS05060 | - | 711505..712275 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| QA624_RS05065 | sucC | 712383..713548 (+) | 1166 | Protein_662 | ADP-forming succinate--CoA ligase subunit beta | - |
| QA624_RS05070 | sucD | 713570..714478 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| QA624_RS05075 | - | 714728..714943 (+) | 216 | Protein_664 | IS200/IS605 family transposase | - |
| QA624_RS05080 | dprA | 715284..716156 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| QA624_RS05085 | topA | 716339..718408 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| QA624_RS05090 | trmFO | 718433..719740 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| QA624_RS05095 | xerC | 719965..720855 (+) | 891 | WP_002456225.1 | tyrosine recombinase XerC | - |
| QA624_RS05100 | hslV | 720859..721401 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| QA624_RS05105 | hslU | 721470..722873 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| QA624_RS05110 | codY | 722897..723670 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| QA624_RS05115 | rpsB | 724029..724817 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=812749 QA624_RS05080 WP_001829468.1 715284..716156(+) (dprA) [Staphylococcus epidermidis strain 1FSE05]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=812749 QA624_RS05080 WP_001829468.1 715284..716156(+) (dprA) [Staphylococcus epidermidis strain 1FSE05]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |