NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	LLNCDO1820_RS10705	Genome accession	NZ_CP120927
Coordinates	2094688..2095626 (-)	Length	312 a.a.
NCBI ID	WP_004254589.1	Uniprot ID	A0A2X0QYG5
Organism	Lactococcus lactis subsp. lactis strain NCDO1820
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2089688..2100626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLNCDO1820_RS10680 (LLNCDO1820_10675)	frr	2089806..2090363 (-)	558	WP_004254618.1	ribosome recycling factor	-
LLNCDO1820_RS10685 (LLNCDO1820_10680)	pyrH	2090575..2091291 (-)	717	WP_004254608.1	UMP kinase	-
LLNCDO1820_RS10690 (LLNCDO1820_10685)	-	2091376..2091828 (-)	453	WP_010906263.1	hypothetical protein	-
LLNCDO1820_RS10695 (LLNCDO1820_10690)	-	2091962..2093149 (-)	1188	WP_010906264.1	acetate kinase	-
LLNCDO1820_RS10700 (LLNCDO1820_10695)	-	2093306..2094493 (-)	1188	WP_004254593.1	acetate kinase	-
LLNCDO1820_RS10705 (LLNCDO1820_10700)	comYH	2094688..2095626 (-)	939	WP_004254589.1	class I SAM-dependent methyltransferase	Machinery gene
LLNCDO1820_RS10710 (LLNCDO1820_10705)	-	2095714..2095965 (-)	252	WP_004254583.1	DUF3165 family protein	-
LLNCDO1820_RS10715 (LLNCDO1820_10710)	typA	2096062..2097894 (-)	1833	WP_025016832.1	translational GTPase TypA	-
LLNCDO1820_RS10720 (LLNCDO1820_10715)	-	2098082..2098540 (-)	459	WP_010906266.1	hypothetical protein	-
LLNCDO1820_RS10725 (LLNCDO1820_10720)	-	2098556..2099329 (-)	774	WP_004254570.1	hypothetical protein	-
LLNCDO1820_RS10730 (LLNCDO1820_10725)	-	2099666..2100292 (-)	627	WP_010906267.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 312 a.a. Molecular weight: 34754.93 Da Isoelectric Point: 4.4060

                                >NTDB_id=809397 LLNCDO1820_RS10705 WP_004254589.1 2094688..2095626(-) (comYH) [Lactococcus lactis subsp. lactis strain NCDO1820]

MDMEKVAQGFELVVANIMLLSEKLGTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ

VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS

QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP

QGPLLKEWISKHGSVMAIITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide

Download Length: 939 bp

                                >NTDB_id=809397 LLNCDO1820_RS10705 WP_004254589.1 2094688..2095626(-) (comYH) [Lactococcus lactis subsp. lactis strain NCDO1820]

ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGGTACAGA

TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA

ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA

GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA

TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA

AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT

CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT

TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT

TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT

CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTATCATCACTTTACCAAAATCACTTTTTAA

TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA

CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains

No domain identified.

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2X0QYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	48.562	100	0.487
comYH	Streptococcus mutans UA159	48.243	100	0.484

Detailed information NTG0809397