Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RMP65_RS09600 Genome accession   NZ_CP135089
Coordinates   1979402..1979851 (-) Length   149 a.a.
NCBI ID   WP_313680519.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1974402..1984851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS09585 (RMP65_09585) - 1974899..1975693 (+) 795 WP_024384180.1 formate/nitrite transporter family protein -
  RMP65_RS09590 (RMP65_09590) - 1975776..1977560 (-) 1785 WP_105136536.1 ABC transporter ATP-binding protein -
  RMP65_RS09595 (RMP65_09595) - 1977700..1979409 (-) 1710 WP_170241171.1 ABC transporter ATP-binding protein -
  RMP65_RS09600 (RMP65_09600) rcrR 1979402..1979851 (-) 450 WP_313680519.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RMP65_RS09605 (RMP65_09605) - 1980073..1981089 (+) 1017 WP_313680520.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RMP65_RS09610 (RMP65_09610) galU 1981135..1982037 (+) 903 WP_029172893.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RMP65_RS09615 (RMP65_09615) - 1982064..1982741 (-) 678 WP_313680521.1 rhomboid family intramembrane serine protease -
  RMP65_RS09620 (RMP65_09620) - 1982725..1983267 (-) 543 WP_222812568.1 5-formyltetrahydrofolate cyclo-ligase -
  RMP65_RS09625 (RMP65_09625) - 1983310..1984437 (-) 1128 WP_208546550.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17633.13 Da        Isoelectric Point: 7.1873

>NTDB_id=808973 RMP65_RS09600 WP_313680519.1 1979402..1979851(-) (rcrR) [Streptococcus suis strain ID34567]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGWSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=808973 RMP65_RS09600 WP_313680519.1 1979402..1979851(-) (rcrR) [Streptococcus suis strain ID34567]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTACGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTAAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTTGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416