Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P4829_RS00245 Genome accession   NZ_CP120846
Coordinates   44540..44830 (-) Length   96 a.a.
NCBI ID   WP_087941801.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39540..49830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS00205 (P4829_00205) darA 39558..39887 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  P4829_RS00210 (P4829_00210) - 39900..40340 (+) 441 WP_063639021.1 YaaR family protein -
  P4829_RS00215 (P4829_00215) holB 40352..41341 (+) 990 WP_010787388.1 DNA polymerase III subunit delta' -
  P4829_RS00220 (P4829_00220) ricT 41344..42171 (+) 828 WP_003328602.1 competence/sporulation regulator complex protein RicT -
  P4829_RS00225 (P4829_00225) yabA 42186..42545 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  P4829_RS00230 (P4829_00230) - 42606..43349 (+) 744 WP_063639020.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P4829_RS00235 (P4829_00235) - 43336..43635 (+) 300 WP_063639019.1 GIY-YIG nuclease family protein -
  P4829_RS00240 (P4829_00240) rsmI 43610..44488 (+) 879 WP_063639018.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P4829_RS00245 (P4829_00245) abrB 44540..44830 (-) 291 WP_087941801.1 transition state genes transcriptional regulator AbrB Regulator
  P4829_RS00250 (P4829_00250) metG 45317..47311 (+) 1995 WP_063639017.1 methionine--tRNA ligase -
  P4829_RS00255 (P4829_00255) - 47390..48157 (+) 768 WP_063639016.1 TatD family hydrolase -
  P4829_RS00260 (P4829_00260) - 48315..49640 (+) 1326 WP_063639015.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10801.62 Da        Isoelectric Point: 6.3482

>NTDB_id=808809 P4829_RS00245 WP_087941801.1 44540..44830(-) (abrB) [Bacillus atrophaeus strain MBLB1156]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=808809 P4829_RS00245 WP_087941801.1 44540..44830(-) (abrB) [Bacillus atrophaeus strain MBLB1156]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958