Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   RMQ62_RS06295 Genome accession   NZ_CP135065
Coordinates   1277022..1277843 (+) Length   273 a.a.
NCBI ID   WP_313680530.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272022..1282843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS06275 (RMQ62_06275) - 1273523..1275724 (+) 2202 WP_014636726.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RMQ62_RS06280 (RMQ62_06280) dtd 1275726..1276169 (+) 444 WP_012027970.1 D-aminoacyl-tRNA deacylase -
  RMQ62_RS06285 (RMQ62_06285) - 1276245..1276430 (+) 186 WP_029752543.1 hypothetical protein -
  RMQ62_RS06290 (RMQ62_06290) - 1276732..1276806 (+) 75 WP_232503818.1 hypothetical protein -
  RMQ62_RS06295 (RMQ62_06295) comE/blpR 1277022..1277843 (+) 822 WP_313680530.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  RMQ62_RS06300 (RMQ62_06300) - 1277907..1278581 (+) 675 WP_313680529.1 type II CAAX endopeptidase family protein -
  RMQ62_RS06305 (RMQ62_06305) - 1278679..1278954 (+) 276 WP_029752538.1 hypothetical protein -
  RMQ62_RS06310 (RMQ62_06310) - 1278990..1279649 (-) 660 WP_002942034.1 metal-dependent transcriptional regulator -
  RMQ62_RS06315 (RMQ62_06315) - 1279775..1280698 (+) 924 WP_013730650.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  RMQ62_RS06320 (RMQ62_06320) - 1281238..1282008 (+) 771 WP_024381222.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 31523.04 Da        Isoelectric Point: 5.3495

>NTDB_id=808524 RMQ62_RS06295 WP_313680530.1 1277022..1277843(+) (comE/blpR) [Streptococcus suis strain ID24665]
MLNIFVLEDDFFQQSRLENAIRRCVEETSVRYKFLEFFGKSNQLLESIEEAGNHQFFFLDIEIKGEEKKGMEIAKEIRDC
DPYAVIVFVTTHSEFMPVTYRYRVSALDFIDKGLEDSDFQKAVSDVLVHAFENIDHTVAENSFVYKTETAHIQVPFSDIL
YFETSSTIHKVILKTKTGQTEFYGKVSDIAKADERLYQAHRSCVVNPLNISVLITAVLFAFVHSYEISLSFWSALFPGFL
FSWIYYKTNHLKYPIVAHILSNSIVTILNVISV

Nucleotide


Download         Length: 822 bp        

>NTDB_id=808524 RMQ62_RS06295 WP_313680530.1 1277022..1277843(+) (comE/blpR) [Streptococcus suis strain ID24665]
ATGCTTAATATTTTTGTATTAGAAGATGATTTTTTTCAGCAGAGCAGGTTAGAAAATGCTATTAGGCGGTGTGTTGAAGA
AACGTCAGTAAGGTATAAATTCCTAGAATTTTTTGGTAAATCAAATCAATTATTGGAATCAATCGAGGAAGCGGGGAATC
ACCAATTTTTCTTTTTAGATATTGAAATCAAAGGTGAAGAAAAGAAAGGAATGGAAATCGCTAAAGAAATCCGGGATTGC
GATCCCTATGCTGTTATTGTCTTTGTAACGACACACTCAGAATTTATGCCGGTAACATATCGTTATCGAGTCTCTGCTCT
AGATTTTATAGATAAAGGCCTGGAGGATAGTGACTTTCAAAAGGCAGTATCAGATGTCTTAGTGCATGCTTTTGAAAATA
TTGATCATACTGTAGCTGAAAATTCTTTTGTATACAAAACTGAAACTGCTCATATTCAAGTTCCTTTTAGTGACATCCTT
TATTTTGAAACATCATCAACGATTCATAAAGTCATTTTAAAAACGAAAACAGGTCAGACAGAGTTTTACGGGAAAGTATC
GGATATAGCGAAAGCTGATGAAAGACTTTACCAGGCACATCGTTCTTGTGTAGTGAATCCATTAAATATTAGCGTGTTAA
TTACAGCCGTTTTATTTGCTTTTGTACATAGTTATGAAATTTCTTTGAGTTTCTGGTCGGCACTTTTTCCAGGATTTTTG
TTTTCTTGGATTTACTATAAAACGAACCATCTCAAATATCCGATAGTGGCACATATCTTGTCGAACAGTATTGTGACCAT
TTTAAATGTTATAAGTGTTTAA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-213)

Type II CAAX prenyl endopeptidase Rce1-like (Rce1-like)

(209-263)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

55.189

77.656

0.429
  comE/comE1 Streptococcus equinus JB1

49.289

77.289

0.381