Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   RKE30_RS02540 Genome accession   NZ_CP134875
Coordinates   561761..562885 (-) Length   374 a.a.
NCBI ID   WP_313742590.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 556761..567885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS02515 (RKE30_02515) cseB 557140..557841 (-) 702 WP_313742586.1 two-component system response regulator CseB -
  RKE30_RS02520 (RKE30_02520) - 558048..558716 (-) 669 WP_313742587.1 hypothetical protein -
  RKE30_RS02525 (RKE30_02525) - 558704..559243 (-) 540 WP_132856486.1 SigE family RNA polymerase sigma factor -
  RKE30_RS02530 (RKE30_02530) - 559575..560561 (-) 987 WP_313742588.1 A/G-specific adenine glycosylase -
  RKE30_RS02535 (RKE30_02535) - 560776..561609 (+) 834 WP_313742589.1 hypothetical protein -
  RKE30_RS02540 (RKE30_02540) disA 561761..562885 (-) 1125 WP_313742590.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  RKE30_RS02545 (RKE30_02545) radA/sms 562967..564376 (-) 1410 WP_313742591.1 DNA repair protein RadA Machinery gene
  RKE30_RS02550 (RKE30_02550) - 564571..566328 (+) 1758 WP_313742592.1 BACON domain-containing protein -
  RKE30_RS02555 (RKE30_02555) - 566575..567420 (-) 846 WP_313742593.1 hypothetical protein -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40095.84 Da        Isoelectric Point: 5.0022

>NTDB_id=808203 RKE30_RS02540 WP_313742590.1 561761..562885(-) (disA) [Streptomyces sp. Li-HN-5-11]
MAANDRAAAPGKSGGSSRADGLMRASLSAVAPGTALRDGLERVLRGNTGGLIVLGSDKTVETMCTGGFVLDVDFTATRLR
ELCKLDGALVLSSDLSKILRAGVQLVPDPTIPTEETGTRHRTADRVSKQVGFPVVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALAELDALSHAELLELPTVARALGYTGSPETLDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=808203 RKE30_RS02540 WP_313742590.1 561761..562885(-) (disA) [Streptomyces sp. Li-HN-5-11]
GTGGCAGCCAACGACCGGGCGGCAGCTCCCGGAAAGTCCGGTGGGAGTTCCCGTGCCGACGGCCTGATGCGCGCCTCCCT
GAGCGCCGTGGCTCCGGGCACGGCCCTGCGCGACGGCCTCGAGCGGGTGCTGCGCGGCAACACCGGCGGACTCATCGTGC
TCGGCTCCGACAAGACCGTCGAGACGATGTGCACGGGCGGCTTCGTGCTGGACGTCGACTTCACGGCGACGCGGCTGCGG
GAGCTGTGCAAGCTGGACGGCGCCCTGGTGCTGTCGTCGGACCTGTCGAAGATCCTGCGGGCGGGCGTGCAGCTGGTCCC
GGACCCGACCATTCCCACGGAGGAGACGGGCACGCGGCACCGCACGGCGGACCGGGTGAGCAAGCAGGTCGGCTTCCCGG
TGGTCTCGGTCTCGCAGTCGATGCGGCTGATCGCCCTGTACGTCGACGGTCAGCGCCGCGTCCTGGAGGACTCCGCGGCG
ATCCTCTCCCGGGCGAACCAGGCCCTGGCCACCCTGGAGCGCTACAAGCTCCGCCTGGACGAGGTGGCGGGCACGCTGTC
GGCACTGGAGATCGAGGACCTGGTGACCGTCCGGGACGTCTCGGCGGTCGCGCAGCGCCTGGAGATGGTGCGCCGCATCG
CCACCGAAATCGCCGAGTACGTGGTCGAGCTGGGTACGGACGGGCGCCTTCTCGCCCTGCAGCTGGACGAGTTGATCGCG
GGCGTGGAGCCCGAGCGCGAACTGGTCGTCCGCGACTACGTTCCCGAGCCCACCGCCAAGCGTTCCCGCACCGTCGACGA
GGCGTTGGCCGAACTCGACGCGCTCAGCCACGCCGAGCTGCTCGAACTGCCCACGGTGGCCCGAGCCCTGGGCTACACCG
GCTCCCCCGAGACCCTCGACTCGGCGGTCTCCCCTCGCGGCTTCCGCCTGCTGGCGAAGGTCCCGCGCCTGCCCGGCGCC
ATCATCGACCGCCTGGTCGAGCACTTCGGCGGCCTGCAGAAGCTGCTCGCGGCCAGCGTCGACGACCTGCAGACCGTGGA
CGGCGTGGGCGAGGCGAGGGCGCGGAGCGTCCGCGAGGGCCTGTCGCGGCTGGCGGAGTCGTCGATCCTGGAGCGGTACG
TGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.983

96.524

0.444