Detailed information NTG0080816

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: OW489_RS07925
• Genome accession: NZ_AP026446
• Coordinates: 1649495..1650697 (+)
• Length: 400 a.a.
• NCBI ID: WP_120856471.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain CHC155
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1644495..1655697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OW489_RS07910	-	1646529..1646663 (+)	135	WP_120856477.1	type IV secretion system protein VirB7	-
OW489_RS07915 (CHC155_15470)	-	1646656..1647825 (+)	1170	WP_120856475.1	VirB8/TrbF family protein	-
OW489_RS07920 (CHC155_15480)	-	1647822..1649498 (+)	1677	WP_120856473.1	TrbG/VirB9 family P-type conjugative transfer protein	-
OW489_RS07925 (CHC155_15490)	comB10	1649495..1650697 (+)	1203	WP_120856471.1	DNA type IV secretion system protein ComB10	Machinery gene
OW489_RS07930 (CHC155_15500)	-	1650681..1652930 (+)	2250	WP_120856469.1	collagen-like protein	-
OW489_RS07935 (CHC155_15510)	-	1652943..1653920 (+)	978	WP_120824239.1	hypothetical protein	-
OW489_RS07940 (CHC155_15520)	-	1653938..1654210 (+)	273	WP_205583491.1	hypothetical protein	-
OW489_RS07945 (CHC155_15530)	-	1654215..1655159 (+)	945	WP_120824237.1	CpaF/VirB11 family protein	-
OW489_RS07950 (CHC155_15540)	-	1655156..1655674 (+)	519	WP_120824236.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44721.38 Da
• Isoelectric Point: 9.8768

>NTDB_id=80816 OW489_RS07925 WP_120856471.1 1649495..1650697(+) (comB10) [Helicobacter pylori strain CHC155]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPAAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKYTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSDEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=80816 OW489_RS07925 WP_120856471.1 1649495..1650697(+) (comB10) [Helicobacter pylori strain CHC155]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCTAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTTCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTGCAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGTATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAGACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.181	98.25	0.523