Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P5649_RS13800 Genome accession   NZ_CP120613
Coordinates   2637476..2638279 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 23521     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2632476..2643279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS13780 (P5649_13780) yqxC 2632586..2633431 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  P5649_RS13785 (P5649_13785) argR 2633529..2633978 (+) 450 WP_003230265.1 arginine repressor ArgR -
  P5649_RS13790 (P5649_13790) recN 2634015..2635745 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  P5649_RS13795 (P5649_13795) spoIVB 2635920..2637200 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  P5649_RS13800 (P5649_13800) spo0A 2637476..2638279 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  P5649_RS13805 (P5649_13805) yqiG 2638744..2639862 (-) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  P5649_RS13810 (P5649_13810) - 2639935..2640087 (-) 153 WP_003230276.1 hypothetical protein -
  P5649_RS13815 (P5649_13815) yqiH 2640395..2640688 (+) 294 WP_003230284.1 lipoprotein -
  P5649_RS13820 (P5649_13820) yqiI 2640703..2641323 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  P5649_RS13825 (P5649_13825) glpQB 2641402..2642133 (+) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=806929 P5649_RS13800 WP_003226427.1 2637476..2638279(+) (spo0A) [Bacillus subtilis strain DSM 23521]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=806929 P5649_RS13800 WP_003226427.1 2637476..2638279(+) (spo0A) [Bacillus subtilis strain DSM 23521]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1