Detailed information NTG0806866

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: P5653_RS22080
• Genome accession: NZ_CP120610
• Coordinates: 4363862..4364974 (+)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus paralicheniformis strain DSM 28591
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4358862..4369974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5653_RS22055 (P5653_22055)	rnpA	4359590..4359949 (-)	360	WP_020453656.1	ribonuclease P protein component	-
P5653_RS22060 (P5653_22060)	rpmH	4360034..4360168 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
P5653_RS22065 (P5653_22065)	dnaA	4360808..4362148 (+)	1341	WP_009330034.1	chromosomal replication initiator protein DnaA	-
P5653_RS22070 (P5653_22070)	dnaN	4362326..4363462 (+)	1137	WP_020449764.1	DNA polymerase III subunit beta	-
P5653_RS22075 (P5653_22075)	yaaA	4363630..4363845 (+)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
P5653_RS22080 (P5653_22080)	recF	4363862..4364974 (+)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
P5653_RS22085 (P5653_22085)	-	4364992..4365234 (+)	243	WP_020449765.1	extracellular matrix regulator RemB	-
P5653_RS22090 (P5653_22090)	gyrB	4365295..4367208 (+)	1914	WP_020449766.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
P5653_RS22095 (P5653_22095)	gyrA	4367398..4369872 (+)	2475	WP_043054015.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=806866 P5653_RS22080 WP_003178089.1 4363862..4364974(+) (recF) [Bacillus paralicheniformis strain DSM 28591]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=806866 P5653_RS22080 WP_003178089.1 4363862..4364974(+) (recF) [Bacillus paralicheniformis strain DSM 28591]
TTGTATATCCAAAATCTAACATTATCGTCTTACCGTAATTATGAACGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCCAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTTAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCAGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGCTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGTCAGCAGCGAACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTTTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACTTTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886