Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P5637_RS18675 Genome accession   NZ_CP120601
Coordinates   3638734..3640113 (+) Length   459 a.a.
NCBI ID   WP_145685663.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain PRO109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3633734..3645113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS18655 (P5637_18655) - 3634102..3634566 (+) 465 WP_020449835.1 CtsR family transcriptional regulator -
  P5637_RS18660 (P5637_18660) - 3634581..3635134 (+) 554 Protein_3666 UvrB/UvrC motif-containing protein -
  P5637_RS18665 (P5637_18665) - 3635134..3636225 (+) 1092 WP_023855926.1 protein arginine kinase -
  P5637_RS18670 (P5637_18670) clpC 3636222..3638654 (+) 2433 WP_020449838.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  P5637_RS18675 (P5637_18675) radA 3638734..3640113 (+) 1380 WP_145685663.1 DNA repair protein RadA Machinery gene
  P5637_RS18680 (P5637_18680) disA 3640117..3641193 (+) 1077 WP_020449840.1 DNA integrity scanning diadenylate cyclase DisA -
  P5637_RS18685 (P5637_18685) - 3641325..3642413 (+) 1089 WP_009330350.1 PIN/TRAM domain-containing protein -
  P5637_RS18690 (P5637_18690) ispD 3642430..3643125 (+) 696 WP_020449841.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  P5637_RS18695 (P5637_18695) ispF 3643118..3643594 (+) 477 WP_020449842.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49947.41 Da        Isoelectric Point: 7.7194

>NTDB_id=806680 P5637_RS18675 WP_145685663.1 3638734..3640113(+) (radA) [Bacillus paralicheniformis strain PRO109]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLRGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=806680 P5637_RS18675 WP_145685663.1 3638734..3640113(+) (radA) [Bacillus paralicheniformis strain PRO109]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGTTACGAATCCGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACGGTGCAAAAGCCTTCACCTCTCACTTCAATCGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATTGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCATCATTCGTGGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATTACATCTGC
TCCAGGCAGCGTGTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACAAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTATTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAAGTGCTGAATCCGTCGGAGATCTTTCTCGAAGAGCGCTCGGCTGGAGCAGCCG
GCTCGAGTGTCGTGGCTTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCGACAAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGATCATAACCGCGTCTCATTGCTGATGGCGGTTTTAGAGAAAAGGGTTGG
GCTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATCGACCTCGCCG
TTGCTGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGCGAAGTCGGCTTGACA
GGGGAAGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAAGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

90.83

99.782

0.906
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61