Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RJW54_RS09630 Genome accession   NZ_CP134487
Coordinates   1922080..1922721 (-) Length   213 a.a.
NCBI ID   WP_024394813.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1917080..1927721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS09610 (RJW54_09590) - 1917918..1919075 (+) 1158 WP_141605009.1 site-specific integrase -
  RJW54_RS09615 (RJW54_09595) cysK 1919305..1920231 (+) 927 WP_029178437.1 cysteine synthase A -
  RJW54_RS09620 (RJW54_09600) - 1920257..1920628 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  RJW54_RS09625 (RJW54_09605) - 1920630..1922030 (-) 1401 WP_024394814.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  RJW54_RS09630 (RJW54_09610) vraR 1922080..1922721 (-) 642 WP_024394813.1 response regulator transcription factor Regulator
  RJW54_RS09635 (RJW54_09615) - 1922693..1923709 (-) 1017 WP_002937028.1 sensor histidine kinase -
  RJW54_RS09640 (RJW54_09620) liaF 1923706..1924365 (-) 660 WP_225533322.1 cell wall-active antibiotics response protein LiaF -
  RJW54_RS09645 (RJW54_09625) stkP 1924822..1926816 (-) 1995 WP_009909429.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  RJW54_RS09650 (RJW54_09630) - 1926816..1927553 (-) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23804.39 Da        Isoelectric Point: 4.8970

>NTDB_id=804035 RJW54_RS09630 WP_024394813.1 1922080..1922721(-) (vraR) [Streptococcus suis strain MY1C3_3B]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=804035 RJW54_RS09630 WP_024394813.1 1922080..1922721(-) (vraR) [Streptococcus suis strain MY1C3_3B]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTATAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTACCTAGATAATGAAAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGTTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCCTTCATATCCTTAAAAACTGTTAAGACCCATGTTTCCAATATTTT
ATCCAAACTAGCTGTTAGCGATCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

55.072

97.183

0.535
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.408