Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RJW49_RS01125 Genome accession   NZ_CP134477
Coordinates   202796..205288 (-) Length   830 a.a.
NCBI ID   WP_074393370.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197796..210288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS01100 (RJW49_01100) dinB 198438..199505 (+) 1068 WP_014735346.1 DNA polymerase IV -
  RJW49_RS01105 (RJW49_01105) - 199548..199967 (+) 420 WP_014735347.1 Rrf2 family transcriptional regulator -
  RJW49_RS01110 (RJW49_01110) - 200206..200832 (+) 627 WP_014735348.1 NAD(P)-dependent oxidoreductase -
  RJW49_RS01115 (RJW49_01115) - 200936..201856 (+) 921 WP_074393371.1 1-phosphofructokinase family hexose kinase -
  RJW49_RS01120 (RJW49_01120) - 201995..202690 (-) 696 WP_014735351.1 hypothetical protein -
  RJW49_RS01125 (RJW49_01125) recD/recD2/recDB 202796..205288 (-) 2493 WP_074393370.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RJW49_RS01130 (RJW49_01130) lepB 205659..206288 (-) 630 WP_011921809.1 signal peptidase I -
  RJW49_RS01135 (RJW49_01135) rnhC 206298..207188 (-) 891 WP_012774927.1 ribonuclease HIII -
  RJW49_RS01140 (RJW49_01140) - 207273..208256 (+) 984 WP_014735354.1 Gfo/Idh/MocA family protein -
  RJW49_RS01145 (RJW49_01145) - 208605..209621 (+) 1017 WP_171840989.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 830 a.a.        Molecular weight: 93092.36 Da        Isoelectric Point: 4.5419

>NTDB_id=803880 RJW49_RS01125 WP_074393370.1 202796..205288(-) (recD/recD2/recDB) [Streptococcus suis strain NLS40]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHTNLTRLMGKNGFKPFPRADVEAA
IAELESISSLTYDDVQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKEALAEKAESKTVATTQTQPPTQPDRKEQVKVGKENNLQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFNLK

Nucleotide


Download         Length: 2493 bp        

>NTDB_id=803880 RJW49_RS01125 WP_074393370.1 202796..205288(-) (recD/recD2/recDB) [Streptococcus suis strain NLS40]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATACAAACCTAACTCGCCTGATGGGAAAAAACGGCTTCAAGCCCTTCCCACGCGCAGACGTCGAGGCTGCC
ATAGCAGAGCTGGAAAGCATATCTTCTCTCACCTACGATGACGTTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGGCTGCCTTCCGCCACCATCCACCGCCACCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGCGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAAACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCATCTGTCAGTCCCGGTCAAGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGGGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCTATCAAGTCAGGTATCCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCTGCAGGTATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAAATCACTCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTCCAGGTCGTTATTCTTCCTATCACTCGCACCAGCCACCGTATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGCAAAACAGTGGCAACCACACAAACCCAGCCCCCTACTCAGCCAGACAGGAAAGAACAGG
TTAAAGTAGGCAAAGAAAACAACCTACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACGAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAACCTTAAGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.579

91.566

0.381