Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   RJ558_RS06400 Genome accession   NZ_CP134397
Coordinates   1358561..1359610 (+) Length   349 a.a.
NCBI ID   WP_310957436.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003s     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353561..1364610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ558_RS06380 (RJ558_06380) - 1353602..1354345 (+) 744 WP_001869641.1 carbonic anhydrase -
  RJ558_RS06385 (RJ558_06385) - 1354579..1355709 (-) 1131 WP_310957433.1 DUF874 family protein -
  RJ558_RS06390 (RJ558_06390) asd 1356144..1357184 (-) 1041 WP_310957434.1 aspartate-semialdehyde dehydrogenase -
  RJ558_RS06395 (RJ558_06395) hisS 1357171..1358499 (-) 1329 WP_310957435.1 histidine--tRNA ligase -
  RJ558_RS06400 (RJ558_06400) waaF 1358561..1359610 (+) 1050 WP_310957436.1 lipopolysaccharide heptosyltransferase II Regulator
  RJ558_RS06405 (RJ558_06405) - 1359802..1360074 (-) 273 WP_000744165.1 hypothetical protein -
  RJ558_RS06410 (RJ558_06410) fusA 1360646..1362724 (-) 2079 WP_310957437.1 elongation factor G -
  RJ558_RS06415 (RJ558_06415) rpsG 1362736..1363203 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  RJ558_RS06420 (RJ558_06420) rpsL 1363219..1363626 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39432.22 Da        Isoelectric Point: 9.6674

>NTDB_id=803659 RJ558_RS06400 WP_310957436.1 1358561..1359610(+) (waaF) [Helicobacter pylori strain ICDC15003s]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NAYNLCAKTSIEELIECIATLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=803659 RJ558_RS06400 WP_310957436.1 1358561..1359610(+) (waaF) [Helicobacter pylori strain ICDC15003s]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTACGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTTCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGGTAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGTTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATCCAAT
AACGCTTACAATCTGTGCGCGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGTGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364