Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RJ648_RS14075 Genome accession   NZ_CP134380
Coordinates   2894438..2895067 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM11353     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2889438..2900067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ648_RS14060 (RJ648_14065) helD 2889680..2891734 (-) 2055 WP_001315388.1 DNA helicase IV -
  RJ648_RS14065 (RJ648_14070) yccF 2891857..2892303 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RJ648_RS14070 (RJ648_14075) yccS 2892313..2894475 (+) 2163 WP_000875044.1 YccS family putative transporter -
  RJ648_RS14075 (RJ648_14080) sxy/tfoX 2894438..2895067 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RJ648_RS14080 (RJ648_14085) sulA 2895286..2895795 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RJ648_RS14085 (RJ648_14090) ompA 2896152..2897192 (+) 1041 WP_000750416.1 porin OmpA -
  RJ648_RS14090 (RJ648_14095) matP 2897268..2897720 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RJ648_RS14095 (RJ648_14100) ycbZ 2897906..2899666 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=803264 RJ648_RS14075 WP_000839153.1 2894438..2895067(-) (sxy/tfoX) [Escherichia coli strain TUM11353]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=803264 RJ648_RS14075 WP_000839153.1 2894438..2895067(-) (sxy/tfoX) [Escherichia coli strain TUM11353]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1