Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJ646_RS21560 Genome accession   NZ_CP134358
Coordinates   4518946..4519482 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TUM13936     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4513946..4524482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ646_RS21540 (RJ646_21540) soxR 4515675..4516139 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  RJ646_RS21545 (RJ646_21545) soxS 4516225..4516548 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RJ646_RS21550 (RJ646_21550) pdeC 4516551..4518137 (-) 1587 WP_045177302.1 c-di-GMP phosphodiesterase PdeC -
  RJ646_RS21555 (RJ646_21555) yjcB 4518566..4518847 (+) 282 WP_001295689.1 YjcB family protein -
  RJ646_RS21560 (RJ646_21560) ssb 4518946..4519482 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RJ646_RS21565 (RJ646_21565) uvrA 4519737..4522559 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  RJ646_RS21570 (RJ646_21570) yjbR 4522594..4522950 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RJ646_RS21575 (RJ646_21575) yjbQ 4522954..4523370 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RJ646_RS21580 (RJ646_21580) aphA 4523481..4524194 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=802872 RJ646_RS21560 WP_000168305.1 4518946..4519482(-) (ssb) [Escherichia coli strain TUM13936]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=802872 RJ646_RS21560 WP_000168305.1 4518946..4519482(-) (ssb) [Escherichia coli strain TUM13936]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489