Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3U38_RS09810 Genome accession   NZ_CP120077
Coordinates   2084718..2085227 (-) Length   169 a.a.
NCBI ID   WP_323705023.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog121     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2079718..2090227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U38_RS09795 (P3U38_09800) - 2080118..2081995 (-) 1878 WP_323705021.1 ABC-F family ATP-binding cassette domain-containing protein -
  P3U38_RS09800 (P3U38_09805) - 2082107..2082922 (+) 816 WP_015728742.1 ZIP family metal transporter -
  P3U38_RS09805 (P3U38_09810) comA 2083179..2084702 (-) 1524 WP_323705022.1 peptide cleavage/export ABC transporter Regulator
  P3U38_RS09810 (P3U38_09815) comA 2084718..2085227 (-) 510 WP_323705023.1 cysteine peptidase family C39 domain-containing protein Regulator
  P3U38_RS09815 (P3U38_09820) - 2085151..2085342 (-) 192 WP_323705024.1 cysteine peptidase family C39 domain-containing protein -
  P3U38_RS09820 (P3U38_09825) - 2085717..2086025 (-) 309 WP_063284913.1 DUF3884 family protein -
  P3U38_RS09825 (P3U38_09830) - 2086480..2086794 (+) 315 WP_000420682.1 YdcP family protein -
  P3U38_RS09830 (P3U38_09835) - 2086810..2087196 (+) 387 WP_000985015.1 YdcP family protein -
  P3U38_RS09835 (P3U38_09840) - 2087225..2088610 (+) 1386 WP_000813488.1 FtsK/SpoIIIE domain-containing protein -
  P3U38_RS09840 (P3U38_09845) - 2088613..2088765 (+) 153 WP_000879507.1 hypothetical protein -
  P3U38_RS09845 (P3U38_09850) mobT 2088788..2089993 (+) 1206 WP_323705025.1 MobT family relaxase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19848.67 Da        Isoelectric Point: 10.0865

>NTDB_id=802586 P3U38_RS09810 WP_323705023.1 2084718..2085227(-) (comA) [Staphylococcus pseudintermedius strain Dog121]
MDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDVQYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPD
PVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPLLLKEKRLIIKIIIISILVNMINILGSYFMKSIID
FYIPQKLKT

Nucleotide


Download         Length: 510 bp        

>NTDB_id=802586 P3U38_RS09810 WP_323705023.1 2084718..2085227(-) (comA) [Staphylococcus pseudintermedius strain Dog121]
TTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTTTGGTTCAGGTAGCAGATAAGTT
AGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTACAGTATCCTTTTATCGTTCATG
TTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTATATCTATATAGCTGACCCTGAC
CCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAGTTACAATCTTATTAAAACCTAC
ATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTTTAACTTCTTTTATACCTTTATTATTAAAAGAAAAAAGGTTGA
TTATAAAAATAATAATTATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATATTTTATGAAGTCAATTATTGAT
TTTTATATTCCGCAAAAGTTAAAAACATAG

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

53.012

98.225

0.521
  comA Streptococcus pneumoniae Rx1

51.205

98.225

0.503
  comA Streptococcus pneumoniae D39

51.205

98.225

0.503
  comA Streptococcus pneumoniae R6

51.205

98.225

0.503
  comA Streptococcus pneumoniae TIGR4

51.205

98.225

0.503
  comA Streptococcus mitis NCTC 12261

51.205

98.225

0.503
  comA Streptococcus mitis SK321

51.205

98.225

0.503
  comA/nlmT Streptococcus mutans UA159

48.485

97.633

0.473