Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P3U38_RS09805 Genome accession   NZ_CP120077
Coordinates   2083179..2084702 (-) Length   507 a.a.
NCBI ID   WP_323705022.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Dog121     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2078179..2089702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U38_RS09790 (P3U38_09795) recQ 2078327..2080108 (-) 1782 WP_100006801.1 DNA helicase RecQ -
  P3U38_RS09795 (P3U38_09800) - 2080118..2081995 (-) 1878 WP_323705021.1 ABC-F family ATP-binding cassette domain-containing protein -
  P3U38_RS09800 (P3U38_09805) - 2082107..2082922 (+) 816 WP_015728742.1 ZIP family metal transporter -
  P3U38_RS09805 (P3U38_09810) comA 2083179..2084702 (-) 1524 WP_323705022.1 peptide cleavage/export ABC transporter Regulator
  P3U38_RS09810 (P3U38_09815) comA 2084718..2085227 (-) 510 WP_323705023.1 cysteine peptidase family C39 domain-containing protein Regulator
  P3U38_RS09815 (P3U38_09820) - 2085151..2085342 (-) 192 WP_323705024.1 cysteine peptidase family C39 domain-containing protein -
  P3U38_RS09820 (P3U38_09825) - 2085717..2086025 (-) 309 WP_063284913.1 DUF3884 family protein -
  P3U38_RS09825 (P3U38_09830) - 2086480..2086794 (+) 315 WP_000420682.1 YdcP family protein -
  P3U38_RS09830 (P3U38_09835) - 2086810..2087196 (+) 387 WP_000985015.1 YdcP family protein -
  P3U38_RS09835 (P3U38_09840) - 2087225..2088610 (+) 1386 WP_000813488.1 FtsK/SpoIIIE domain-containing protein -
  P3U38_RS09840 (P3U38_09845) - 2088613..2088765 (+) 153 WP_000879507.1 hypothetical protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 57254.42 Da        Isoelectric Point: 9.6488

>NTDB_id=802585 P3U38_RS09805 WP_323705022.1 2083179..2084702(-) (comA) [Staphylococcus pseudintermedius strain Dog121]
MALIASYIIQQILSYLQKYFLILLVKTYSINILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMLSLFLD
VTIIVGISIFLYYQSTILFVLILIIIPIYAVIVFGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQ
IKYNFSNYYENTFLLNKLNIKQNVLKKVVQLILNVSILWVGANIVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQ
IAGVANNRLNEIFTVKSEFEKNKLDIKLNQNSSKLIFSNISYGYGYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKM
MVSFFEPSKGKITLGGLDITNINKSVLRQQIIYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPL
GLDSVLSSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFV
LAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=802585 P3U38_RS09805 WP_323705022.1 2083179..2084702(-) (comA) [Staphylococcus pseudintermedius strain Dog121]
ATGGCTTTAATTGCTTCTTACATTATACAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGAC
ATATTCTATAAATATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAG
GAGACATACTATCAAGACTTAATGATGCAAATTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGAT
GTTACAATAATAGTTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCC
TATTTATGCCGTAATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTT
TGTCTTCTTATTTGATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAG
ATAAAATATAATTTTTCGAATTATTACGAAAACACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAA
GGTTGTTCAATTAATATTAAATGTATCGATTTTATGGGTAGGCGCTAACATAGTTATAGATAATCAAATCTCAATTGGAA
CTTTGCTTGTTTTTAATTCATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAA
ATAGCAGGTGTGGCTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAA
ATTGAACCAAAACTCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGGGTACGAAAAAGAAATCCTTACAGATA
TTAATATAACAATAGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAAATG
ATGGTTAGTTTTTTTGAACCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTT
ACGACAGCAGATTATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAG
TTAAAGAGGTTACGCAAAAGGACATAGATAGTGCTATTAAAATGGCTGAACTAAAATCCTTTATTGATAGCTTACCACTT
GGACTTGATAGTGTATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACT
ATTAACAAATTCTTCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATA
ATTTGATGGCGTTAAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTT
TTAGCAAAAGGAAAAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAA
TTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(291-441)

ABC transporter transmembrane region (ABC_membrane)

(1-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.649

100

0.536
  comA Streptococcus mitis NCTC 12261

53.452

100

0.535
  comA Streptococcus pneumoniae Rx1

53.057

100

0.531
  comA Streptococcus pneumoniae D39

53.057

100

0.531
  comA Streptococcus pneumoniae R6

53.057

100

0.531
  comA Streptococcus pneumoniae TIGR4

52.663

100

0.527
  comA Streptococcus gordonii str. Challis substr. CH1

52.268

100

0.523
  comA/nlmT Streptococcus mutans UA159

49.706

100

0.501